Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq926 105 2e-17 seq1018 102 2e-16 seq427 102 2e-16 >seq926 Length=12678 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || |||||||| |||| ||||| || ||| Sbjct 11874 CAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 11933 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || ||||| || || ||||| ||| || ||| || Sbjct 11934 TCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 11993 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 11994 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 12053 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||||||| | ||||| || Sbjct 12054 CAGAAGGAGTCTACTTTGCACCTGGT 12079 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || |||||||| |||| ||||| || ||| Sbjct 12102 CAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 12161 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || ||||| || || ||||| ||| || ||| || Sbjct 12162 TCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 12221 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 12222 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 12281 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||||||| | ||||| || Sbjct 12282 CAGAAGGAGTCTACTTTGCACCTGGT 12307 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || |||||||| |||| ||||| || ||| Sbjct 11646 CAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGAC 11705 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||| || ||||| || || ||||| ||| || ||| || Sbjct 11706 TCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAG 11765 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || ||| |||||| || Sbjct 11766 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATC 11825 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 11826 CAGAAGGAGTCGACGCTGCACCTGGT 11851 >seq1018 Length=11520 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| |||| ||||| || ||| | |||| Sbjct 72 AAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 131 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| ||| || ||| || | || |||||| Sbjct 132 GTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAGCGCCTGATCTTC 191 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| ||||| Sbjct 192 GCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 251 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 252 ACGCTGCACCTGGT 265 >seq427 Length=22329 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || |||||||| |||| ||||| || ||| | |||| Sbjct 212 AAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCGGACTCGATCGACAAC 153 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||| |||||||| || || ||||| ||| || ||| || | || |||||| Sbjct 152 GTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAGCGCCTGATCTTC 93 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || ||| |||||| ||||||| ||||| Sbjct 92 GCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCG 33 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 32 ACGCTGCACCTGGT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181764759165621