Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq663 147 2e-30 seq926 104 2e-17 seq1018 95.1 1e-14 seq427 93.3 4e-14 seq482 82.4 7e-11 >seq663 Length=23881 Score = 147 bits (162), Expect = 2e-30 Identities = 599/934 (64%), Gaps = 19/934 (2%) Strand=Plus/Plus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 ||||||| |||||| || ||| ||| || || | | |||||| || | ||| ||| Sbjct 22155 GACGCCAAATTGCACACAGCCACCTCATCAGGAGAAG-TGTACTCCATCACTTCACAGCA 22213 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || ||||||| | || ||||| |||||||| || || || || ||||| Sbjct 22214 CAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTTAGCTGCGTC 22273 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATG 147641 ||| | |||||| | || | || ||||| | |||| |||| ||| ||||| Sbjct 22274 CTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCAAACCA--- 22330 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 ||| | ||| || | | || ||| || ||||| || |||||| |||||| | Sbjct 22331 CAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTCTCGTACTTCTCGTAGAG 22390 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 | |||||||||||| || |||| ||| || || ||| | || || || | || Sbjct 22391 CGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTGGGGCAGAACAA 22450 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 |||| || | | || | || || ||| |||||||| || ||||| || ||||| Sbjct 22451 ACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGACCCAAAGGGCGTA 22510 Query 147822 CATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAATT-AAGCA 147877 | | |||||||| ||||| || | || | ||||| ||| | ||| | Sbjct 22511 GAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTCTTGCG---CAAGTCCAAGAA 22567 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT-- 147935 | | | | | || |||||||| || || | ||| | || | | || || || || Sbjct 22568 CTCAA-ACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCCCTTGCGTTTAC 22626 Query 147936 -TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 |||||||||||| || | ||| | | | ||||||||| |||| |||||| | || Sbjct 22627 CTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACATGGGGATGATGC 22686 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 | | | | |||||||||| ||| | |||| | ||| || | | ||||| Sbjct 22687 CATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGGATGTTGTGCATAC 22746 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGA 148114 ||| |||||| || || | |||| || ||| || || | || ||| ||| | Sbjct 22747 TAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCGTAAA 22806 Query 148115 TGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCC 148174 |||| || || ||||| | | | ||||| || ||||| ||| ||| ||| Sbjct 22807 TGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGACGTG 22866 Query 148175 GCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGC 148234 |||| || || ||| || ||||| | |||||||| || || || || ||| | Sbjct 22867 GCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTCTGGGACATGAGCT 22926 Query 148235 GATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGA 148294 |||||||| | || | | ||||||| ||| ||||| ||||| |||||||||| Sbjct 22927 CGTACGTCTCCAAGGCCGCCTTGATGTCGCTCTTGTGGATGCCTAGCGCCACGCGCATGA 22986 Query 148295 GCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGA 148354 ||| ||||| || || || | |||| ||| | || ||| || || | || | Sbjct 22987 TCATCTGCTGCGGCCGCTCCACCACTTTGCCGTTCACGCGGAAAAGGTAGCCCCTCTCTA 23046 Query 148355 GGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 |||||| | || ||||| | ||| || || || Sbjct 23047 ATGTTTTGAAGCCGAAGTAGTCGTACTCGAAGTC 23080 >seq926 Length=12678 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 11864 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 11805 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 11804 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCC 11745 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || || | | || | | || | ||||||||| || | Sbjct 11744 TTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 11685 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || ||||| || || | |||||||||||| Sbjct 11684 CGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11643 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 12092 ACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 12033 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 12032 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCC 11973 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || || | | || | | || | ||||||||| || | Sbjct 11972 TTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 11913 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || ||||| || || | ||| ||||||||| Sbjct 11912 CGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 11870 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || |||| Sbjct 12292 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 12233 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || |||||| || || | Sbjct 12232 AAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACG 12173 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 12172 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTG 12113 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 12112 ACGAAGATCTGCATG 12098 >seq1018 Length=11520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || |||| Sbjct 250 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 191 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || ||| || || || | Sbjct 190 AAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACG 131 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 130 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTC 71 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 70 ACGAAGATCTGCATG 56 >seq427 Length=22329 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || |||| Sbjct 34 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 93 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || ||| || || || | Sbjct 94 AAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACG 153 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 154 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTC 213 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 214 ACGAAGATCTGCAT 227 >seq482 Length=22300 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 || || ||||||||||| || || || || |||||||| || |||| |||| Sbjct 19057 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 19116 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 |||||||| || || || || |||||||| || || ||||| || || | | || Sbjct 19117 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 19176 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | | |||| ||||||||| || | ||| | || || || ||||| || || | || Sbjct 19177 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 19236 Query 132116 ATCTGCATGA 132125 |||||||||| Sbjct 19237 ATCTGCATGA 19246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476589150774360