Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq450 226 3e-54 >seq450 Length=22763 Score = 226 bits (250), Expect = 3e-54 Identities = 456/664 (69%), Gaps = 17/664 (3%) Strand=Plus/Minus Query 146919 CAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCC 146978 ||| || ||||||||||| || || || || ||||| || | || | || || || Sbjct 20120 CAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACTCGCC 20061 Query 146979 CGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTT 147038 || || || || | ||| || ||||||| |||||||||| ||||||||| ||||| Sbjct 20060 AGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAATGTT 20001 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| | || | |||||||| ||| ||||| ||||| || Sbjct 20000 GAATGGCACACCAAGTCCCATGTCAGCAGAGCGCTGGTACATCTGACACGATAGCTCTCC 19941 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 || || ||||||||||| || | |||||||| |||||||||||||| || || || Sbjct 19940 ATCAGCAACGTAAAACTGACAGAACATGTGGCAGGGCGGCAGCGCCATCTCGTTGAGATC 19881 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCG---GGGTTCCTCTTAATCTC 147215 || |||||||||||||| | || | ||| || ||| |||||| | | || Sbjct 19880 AGCAGGGTTCCAGGCCGAAAGTACGATCCG---GCGGTCGGTTGGGTTCGTTCGCAGCTT 19824 Query 147216 TTCGATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCC 147273 | || ||| || | ||| || || || || || | ||| | | | ||| |||| Sbjct 19823 GTGAATCACCTCAGC-CAGTTGATCTACACCTTGATCAGTGTAATCCG-CATGCATGTCC 19766 Query 147274 ACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGC 147333 ||| |||| ||||| || | ||||||||| || ||||| ||||| ||||| || | Sbjct 19765 GTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCACC-AAC 19707 Query 147334 TTTCTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || |||| | ||||| | | | | | |||| | || || | | |||||||||| Sbjct 19706 TTCTCGTGCCTGCAGCCCTCGACTATCCAAATACTCACGCGATCCATTGCCGTCCCAGAT 19647 Query 147393 GCCCA-CTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCA 147451 | | ||| | || | ||| | | ||| ||| | ||||||||| || | Sbjct 19646 GTGAATGTCCTTCTGCTG-CAGCGTGTGCGCACTGGTGTCGCCACTGATGAACCACAGAA 19588 Query 147452 GCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGT 147508 |||||||| || || | ||| || || |||||||| |||||||| |||||| | | Sbjct 19587 GCTCCTCCGCCACACCGCGCCAGAACACTCTCTTGGTCGTCAGCAGTGGGAACATGTTAT 19528 Query 147509 CCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGT 147568 ||||||| ||||| ||| | |||||||| ||||| || || || || || | || Sbjct 19527 CCCTCAGACTGAACCTCATCTGCGCTCCAAACACCGACAGTGTCCCTGTTCCAGTGCGGT 19468 Query 147569 CCTC 147572 | || Sbjct 19467 CTTC 19464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583461006386400