Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq450 114 1e-20 >seq450 Length=22763 Score = 114 bits (126), Expect = 1e-20 Identities = 307/457 (67%), Gaps = 22/457 (5%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC--A 40923 ||||| ||||| || || ||||| || |||| ||| |||||||| || ||||| || | Sbjct 19710 GGTGACCTTGGGCCGGTGTATGGGTTCCAGTGGCGCCATTTTGGTGCCAAATAC-ACGGA 19768 Query 40924 CTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTAT-----AG 40977 | ||| | | ||||| || || |||| | |||||| | | | | || || || Sbjct 19769 C-ATGCATGCGGATTACACTGATCAAGGTGTAGATCAACTGGCTGAG-GTGATTCACAAG 19826 Query 40978 ATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037 | ||| || || | |||| ||| || || || | | || |||||||| | | Sbjct 19827 CTGCGAACGAACCCAA--CCGA---CCGCCGGATCGTACTTTCGGCCTGGAACCCTGCTG 19881 Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATG 41097 | | | |||||| |||| || || || |||| ||||||||||||||| ||| Sbjct 19882 ATCTCAACGAGATGGCGCTGCCGCCCTGCCACATGTTCTGTCAGTTTTACGTTGCTGATG 19941 Query 41098 GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTA 41157 | || || || ||||| |||| || | || | |||||||||||| || || || || | Sbjct 19942 GAGAGCTATCGTGTCAGATGTACCAGCGCTCTGCTGACATGGGACTTGGTGTGCCATTCA 20001 Query 41158 ACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTG 41217 |||| || || || || ||||||||| || | || || || | | ||||||| Sbjct 20002 ACATTGCCAGCTACGCGCTGCTCACGAGATTGGTGGCGCAGGTGGCTGGACTGAAACCTG 20061 Query 41218 GTGAATTTGTTCACACGTTA--GGAGATGGACATATTTACATTAATCACATAGAGCCGTT 41275 | || || || || |||| || || | |||| | || | || ||| | || ||| | Sbjct 20062 GCGAGTTCATT--CATGTTATTGGCGACGCACATGTGTATCTGAACCACGTGGAACCGCT 20119 Query 41276 AACAG-AACAACTGACACGAAAACCTAGACCATTTCC 41311 ||| ||||||| ||||||| || | |||||||| Sbjct 20120 -GCAGAAACAACTTACACGAACGCCACGCCCATTTCC 20155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438072374505