Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq663 185 1e-41 seq130 140 4e-28 seq96 105 8e-18 seq1813 87.8 2e-12 >seq663 Length=23881 Score = 185 bits (204), Expect = 1e-41 Identities = 722/1115 (65%), Gaps = 35/1115 (3%) Strand=Plus/Plus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || |||||||||||||| | ||| | || | ||| ||||| || ||||| |||| Sbjct 21970 CATCAGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCG 22029 Query 111111 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 | ||| | || || || | || ||| || || ||| || || || || | | Sbjct 22030 CC-TCTACGACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACC 22088 Query 111170 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 111229 || || | ||||| | ||| || | || | ||| || || || || | Sbjct 22089 TTGGTTACTTCATACAACCTTTTGTAGTTGAACACACC-GTC-CTCCA----CAAACATC 22142 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || | || ||||||||||| |||||| |||||| | |||||||| | Sbjct 22143 GGCAGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATC 22202 Query 111290 ATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | ||| || |||||| || | ||||| ||||| || | ||||| ||| Sbjct 22203 ACTTCACAGCACAAGTTGCTGGAGCGG---ATCGTGCCCAAGTTTTGCTGGTTCGACTTG 22259 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 ||| || |||||||| |||||| | || |||||||| |||| | | || Sbjct 22260 CGGTTAGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGG 22319 Query 111407 ATAGCCTTCCAAACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCCTCCGCC 111460 || || |||| | | |||| | || || ||| || || ||||||||| | Sbjct 22320 ATGGC-----AAACCACAGTTGCTG-TGCATTGATCGTCTTGCGAGCACGTCCCTCCTTC 22373 Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGC 111519 |||||||| |||||| | |||||||| |||||| | || ||| |||| || || || Sbjct 22374 TCGTACTTCTCGTAGAGCGTCTCAAACTCGTCACCC-CAGCACTCGTAGAGTCCAGGAGC 22432 Query 111520 CTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 | | || ||||| | | ||| | ||| | || || ||||||||||| || || Sbjct 22433 TTCATTGGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATC 22492 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 || | ||| |||| | || | || | |||| | |||| ||| ||||| Sbjct 22493 GGGGACCCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTCTT 22552 Query 111640 TCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 111699 || || || | |||||| | | ||| |||||||| ||||| || || | |||| ||| Sbjct 22553 GCGCAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGA 22612 Query 111700 TCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 ||||| || || || | || | || ||||| || || ||||||| || || | Sbjct 22613 CCCCTTGCGTTTACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAA 22672 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTC 111815 ||| || || || |||| || || || || || || || || | || |||| | Sbjct 22673 CATGGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGT-AGCTGTTGGTGGCAC 22731 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | || || || ||||| || ||||||||||| ||||| ||||||| | Sbjct 22732 GGATGTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCT 22791 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 | || || | || || || | || ||||| |||| | || | | |||||| || Sbjct 22792 TCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGG 22851 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 ||| || || | ||| || ||||| |||||||| || || || ||||| |||| | || Sbjct 22852 ACAATTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGA-AC 22910 Query 111996 CT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 | |||||||| ||||| ||||||||| | | | ||||| | ||||||||| Sbjct 22911 TTCTGGGACATGAGCTCGTACGTCTCCAAGGCCGCCTTGATGTCGCTCTTGTGGATGCCT 22970 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA 112114 | || || ||||||| ||| | ||| || |||| | |||| | | || | Sbjct 22971 AGCGCCACGCGCATGATCATCTGCTGCGGCCGCTCCACCACTTTGCCGTTCACGCGGAAA 23030 Query 112115 AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || |||| | |||| | ||||||| || ||||| Sbjct 23031 AGGTAGCCCCTCTCTAATGTTTTGAAGCCGAAGTA 23065 >seq130 Length=37012 Score = 140 bits (154), Expect = 4e-28 Identities = 355/528 (67%), Gaps = 14/528 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 15227 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 15286 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 122489 |||| || || ||||| |||| | || | ||| |||| | || ||| ||||| Sbjct 15287 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAGTA-GAGCAGACG 15345 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT-AC 122548 || | ||| |||||||||||| | |||| | | |||||||| |||||||| | || Sbjct 15346 GTCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCGATGAGCTCGAC 15405 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | ||||| | ||| | |||| | | ||| ||| | || || || |||||| ||| Sbjct 15406 A-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACAGCGTCACGCACGATCTCGT 15464 Query 122609 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 122664 | | | ||| || || | | || | | | ||| || ||| || Sbjct 15465 GCACGCGGCTCTCCGGCAGCTTGTTGACCA-GCTTGGAGTACATGAGG--CA-GGCGAAG 15520 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 ||| ||| | ||||| || ||| || || || || ||||||| |||||| |||||| Sbjct 15521 TCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATG 15580 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 ||||| |||||||| | ||| | || | |||||| || || |||||||||||||||||| Sbjct 15581 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCTCC 15640 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGAC-TTTGCATCAAACCATTT 122843 || ||||| || | || ||||| | | |||| ||| || | || |||| || Sbjct 15641 ACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGA-CGACACGCGCGGGTCGCACCACTT 15699 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | ||||| || || ||||||| | ||| || | ||| | ||||| Sbjct 15700 GAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCTCAATGGC 15747 >seq96 Length=43778 Score = 105 bits (116), Expect = 8e-18 Identities = 280/421 (67%), Gaps = 15/421 (4%) Strand=Plus/Plus Query 11443 GATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATT 11502 ||||| ||||| || ||||| || || |||| || | ||||| |||||| |||| || Sbjct 38835 GATCTGCCGATCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCCGCGCGGTT 38894 Query 11503 AGTGGCCGCAATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTGAG 11559 || | |||| ||||| | || |||| | || || |||||||||||| || Sbjct 38895 CGTACCAGCAAGCACCACCACACC---CTCACTTGAGTTGAAACCATCCATCTCGACCAG 38951 Query 11560 TAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACT-GCGTT 11618 | || |||| ||| | ||| | ||| || || || | | | | || || || | Sbjct 38952 AAGCTGGTTAAGTGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTC 39010 Query 11619 GCTTGC---CCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 | || |||| ||||| || ||||||||||| ||||| || || || | || | Sbjct 39011 GTGCGCGTGCCACAGCATCGATTTCATCAATGAACACAATGCACGGAGCGTTCGCACGAG 39070 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 | | ||||||||| || || | | |||||||||||| |||||||| | |||| Sbjct 39071 CCTCCTTAAAGAGATCACGCACACGGGACGGACCCACACCAACGAACATCTCGATGAAGT 39130 Query 11736 TTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | |||| | || || |||||| || | | ||||| || |||| ||| || Sbjct 39131 CCGAACCAGA--AATGCTGAAGAATGGAACGCTAGCCTCACCAGCCGTGGCCTTGGCCAG 39188 Query 11794 GAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || ||||| || ||||| || || |||| || || || ||||||||||||||| Sbjct 39189 CAGCGTCTTACCTGTACCGGGGGGGCCAACGAGTAGCGCACCCTTGGGGATCTTGGCACC 39248 Query 11854 A 11854 | Sbjct 39249 A 39249 >seq1813 Length=13815 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 89 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 30 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 29 CCGGTAGGAGCTT 17 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 4834 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 4893 Query 145342 CAGGTAGGAGCTT 145354 | ||||||||||| Sbjct 4894 CCGGTAGGAGCTT 4906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628002945669600