Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq663 226 4e-54 seq130 188 9e-43 >seq663 Length=23881 Score = 226 bits (250), Expect = 4e-54 Identities = 872/1346 (65%), Gaps = 58/1346 (4%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || |||| |||||| ||||| | |||| ||||| |||||||| || || || || Sbjct 21624 TACATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAA 21683 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTT 118299 || || |||||||| |||| || || ||| || ||||| | || | || | | Sbjct 21684 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACATTC--T 21741 Query 118300 CCTTGAGAGCGTCCCAGTCGTA-------GTTGA-GCTTTGTCTCCCCCTGCCACATATC 118351 |||| || || |||| || | | || | || | |||| |||| || Sbjct 21742 CCTTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAGGAGTGACACCCC-----ACATGTC 21796 Query 118352 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 118411 ||||||| | ||| | | || ||||| |||| || ||||| || |||||| | Sbjct 21797 GAACTGGAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCC---AA 21853 Query 118412 CTCC--GCCAATTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCG 118468 |||| | |||| | | || ||| | | |||| || || || || || ||| Sbjct 21854 CTCCTTGGCAATCTCCATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 21913 Query 118469 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACA 118526 |||| | |||| ||| ||||||||| ||| || || || || || Sbjct 21914 CTTGTTCAACTCACGTGCCTGCTCGCTCTCAAACGCGTAGTT--CATAAGGATGAACGCA 21971 Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || |||||||| ||||| | || | || || || | ||| || ||||| || || Sbjct 21972 TCAGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCC 22031 Query 118587 GTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645 ||| | || || || | || ||||| ||| | || || || || || ||||| Sbjct 22032 -TCTACGACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTT 22090 Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAG 118704 || | ||||| | | ||| ||| | || || || || | ||| || | | Sbjct 22091 GGTTACTTCATACAACCTTTTGTAGTTGAACACACCG-------TCCTCCACAAACATCG 22143 Query 118705 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 118764 | || || | ||||||| ||| ||||||| |||||| | ||||||||| || | Sbjct 22144 GCAGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATCA 22203 Query 118765 TTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 ||| ||||||||| || | || ||||||||||| | || || ||||| Sbjct 22204 CTTCACAGCACAAGTTGCTGGAGCGG--ATCGTGCCCAAGTTTTGCTGGTTCGACTTGCG 22261 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 |||| || |||||||| |||||| |||| |||||||| | || | | || || Sbjct 22262 GTTAGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGAT 22321 Query 118883 AGCCTTCCAGACATCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCG 118937 || ||| | | |||| ||| | | | ||| || || ||||| | |||| Sbjct 22322 GGCAAACCACAGTT-----GCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTCTCG 22376 Query 118938 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 118997 ||||| |||||| | |||||||| |||||| | ||| |||| || || || | | Sbjct 22377 TACTTCTCGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCA 22436 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | |||||||| | | ||| | ||| | || || ||||||||||| || || ||| Sbjct 22437 TTGGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGG 22496 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACG 119116 | ||| || || |||| | || || ||| || || | | || || || || Sbjct 22497 ACCCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACT-CGTTACCGTGGTTCTTGCG 22555 Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 119176 ||| ||||| || || | | ||| |||||||| || |||||||| | |||| ||||| Sbjct 22556 CAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCC 22615 Query 119177 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 ||| || || || |||||| || || | ||||| ||||||| || || | ||| Sbjct 22616 CTTGCGTTTACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACAT 22675 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGAC 119293 || ||||| |||| ||| ||| || || || || || || |||| | || Sbjct 22676 GGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGGAT 22735 Query 119294 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAG 119353 | ||| || || ||||| || || |||||||| ||||| || |||| | | || Sbjct 22736 GTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAG 22795 Query 119354 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 119413 || |||| || || || |||||||| ||| | || | | |||||| |||| Sbjct 22796 TGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAA 22855 Query 119414 TTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-T 119472 ||| || | || || |||||||||||||| || || || ||||| |||| | || | | Sbjct 22856 TTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGA-ACTTCT 22914 Query 119473 GGGACATCTTGTCGTAGGTCTCCAAG 119498 ||||||| ||||| ||||||||| Sbjct 22915 GGGACATGAGCTCGTACGTCTCCAAG 22940 >seq130 Length=37012 Score = 188 bits (208), Expect = 9e-43 Identities = 362/523 (69%), Gaps = 18/523 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 15227 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 15286 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | || || |||||||| ||| | || | |||||| | | | ||| ||||| Sbjct 15287 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAGTAGAGCAGACGG 15346 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-ACA 129906 || | ||| |||||||||||| |||| | | |||||||| |||||||| | ||| Sbjct 15347 TCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCGATGAGCTCGACA 15406 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| ||| | |||| | | ||| || ||||||| || |||||||| |||| Sbjct 15407 -GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACAGCGTCACGCACGATCTCGTG 15465 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 130019 | | | ||| | ||| | | ||| || |||| |||| | || ||| | Sbjct 15466 CACGCGGCTCTCCGGCAGCT-TGTTGACCAG---CTTG--GAGTACATGAGGCA-GGCGA 15518 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | ||| ||| | |||||||||||| |||||| || |||||||||| ||||| |||| Sbjct 15519 AGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCA 15578 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 ||||||| |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 15579 TGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCT 15638 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCAC 130198 |||| || || || | || || || | |||| || || | || ||||| Sbjct 15639 CCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGA-CGACACGCGCGGGTCGCACCAC 15697 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 130241 || | |||||| | || || |||| || |||||||| |||| Sbjct 15698 TTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCT 15740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618406589641560