Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq663 201 1e-46 seq130 129 7e-25 seq96 114 2e-20 >seq663 Length=23881 Score = 201 bits (222), Expect = 1e-46 Identities = 436/644 (68%), Gaps = 9/644 (1%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| ||||||||||||| | || || || | ||||| | | | | Sbjct 22999 CCGCAGCAGATGATCATGCGCGTGGCGCTAGGCATCCACAAGAGCGACATCAAGGCGGCC 22940 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||||||| ||||| |||||||| | || | |||| ||||| || || || ||||| Sbjct 22939 TTGGAGACGTACGAGCTCATGTCCCAGAAGT-TCTTCACGCACGCCACGCCCACGCTCTT 22881 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| ||||| || ||| | |||||| ||||| |||||| | | || | |||| || Sbjct 22880 CAACGCTGGCACGCCACGTCCCCAATTGTCCTCGTGCTTCTTGCTGGCTATGCAGGACGA 22821 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | || || || | || || | | ||||||| ||||| ||||||||||| Sbjct 22820 CTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCCTGCATCTCCAAGTGGGCTGG 22761 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAA 104519 || ||||| || || || | | | |||| || | || || || || || | Sbjct 22760 AGGAATTGGCATTAGTATGCACAACATCCGTGCCACCAACAGCT-ACATCCGAGGCACCA 22702 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || |||| || || || ||| | || || ||||||| || || ||||| | Sbjct 22701 ACGGCTCGTCCAATGGCATCATCCCCATGTTGCGGGTGTTTAACGATACTGCTCGCTACG 22642 Query 104580 TAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 104636 | | || | || || || ||||| ||| |||| | || || ||||| ||||||| Sbjct 22641 TGGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTCGCTATTTACCTGGAGCCTTGGCACG 22582 Query 104637 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC 104696 | ||| | | |||||| | || ||||| ||||| ||| ||||| | ||| | Sbjct 22581 CAGATGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGGTAACGAGTTGCATCGGGCGC 22522 Query 104697 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 104756 |||| | |||| ||| || ||| | || ||||| ||||||||| | || || | | || Sbjct 22521 GCGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCCAATG 22462 Query 104757 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAG 104815 |||| ||| | | || || || | | || ||||| |||| ||| ||| | |||||| Sbjct 22461 GCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTACGAGTGCTG-GGGTGAC 22403 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 |||||||| | || ||| ||||||||| | || || || || Sbjct 22402 GAGTTTGAGACGCTCTACGAGAAGTACGAGAAGGAGGGACGTGC 22359 >seq130 Length=37012 Score = 129 bits (142), Expect = 7e-25 Identities = 191/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 || || |||| ||| || ||||| || ||||| | || || | ||||| | Sbjct 15798 CTTATTGACACGTACATCAAGGACATTGTCGAGAAAACCCACCTGCTGCGTGCCATTGAG 15739 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || | |||||| | || |||||||| | ||||| | ||||||| || | || Sbjct 15738 ACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCCG----CG 15683 Query 94792 CGT----TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847 ||| |||| | || || || | || ||||| || ||||||||||||||||| Sbjct 15682 CGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTTCTTCTC 15623 Query 94848 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 || ||||||||| | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 15622 GGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAAGCTT 15563 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| |||||||| ||| ||||||||||| Sbjct 15562 CTCGAACGAGCTCATCAGCCGTGACGAGGG 15533 >seq96 Length=43778 Score = 114 bits (126), Expect = 2e-20 Identities = 280/417 (67%), Gaps = 7/417 (2%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 ||||| ||||| || ||||| ||||| |||| || | ||||| ||||| |||| || Sbjct 38835 GATCTGCCGATCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCCGCGCGGTT 38894 Query 9577 CGTCGCGGCGATGACAACAATACCTGTTTCATTA-TCAAAACCATCCATCTCTGTCAAAA 9635 ||| | || | || || | ||| | | | | | |||||||||||||| || || Sbjct 38895 CGTACCAGCAAGCACCACCACACCC-TCACTTGAGTTGAAACCATCCATCTCGACCAGAA 38953 Query 9636 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--T 9692 | ||||||| || | ||| || || || || || | | | | || || || | | Sbjct 38954 GCTGGTTAAGTGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGT 39012 Query 9693 GCTT-TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 || | |||| ||||| || ||||||||||| || ||||| || || | ||||| Sbjct 39013 GCGCGTGCCACAGCATCGATTTCATCAATGAACACAATGCACGGAGCGTTCGCACGAGCC 39072 Query 9752 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9811 | | ||||||||| || ||||| | ||||||||||| |||||||| | |||| Sbjct 39073 TCCTTAAAGAGATCACGCACACGGGACGGACCCACACCAACGAACATCTCGATGAAGTCC 39132 Query 9812 GCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | ||| || ||| || || ||| ||||| || |||| ||| || || Sbjct 39133 GAACCAGAAATGCTGAAGAATGGAACGCTAGCCTCACCAGCCGTGGCCTTGGCCAGCAGC 39192 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 |||||||| ||||| || || |||| || ||||| || |||||||| ||| Sbjct 39193 GTCTTACCTGTACCGGGGGGGCCAACGAGTAGCGCACCCTTGGGGATCTTGGCACCA 39249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583233816897240