Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq700 179 1e-39 seq926 114 4e-20 seq3117 91.5 4e-13 seq2910 91.5 4e-13 seq1953 89.7 2e-12 >seq700 Length=15699 Score = 179 bits (198), Expect = 1e-39 Identities = 851/1337 (64%), Gaps = 30/1337 (2%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || ||||| ||||||| || ||||||||||| || || || Sbjct 13237 GGTATTGATCTCGGCACGACGTATTCGTGTGTTGGGGTGTGGCAAAATGACCGCGTGGAG 13296 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| ||||| || || ||| | || || ||||| ||||| || || ||||| | Sbjct 13297 ATCATTGCCAATGACCAGGGCAACCGTACGACACCATCGTACGTAGCCTTCACCGAGTCG 13356 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || || | || || ||| | || || || |||| || || | | || || || Sbjct 13357 GAACGACTTATCGGCGATGCAGCGAAGAACCAAGTGGCCATGAACGCGCACAACACTGTG 13416 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA---CAATCTGAT 349441 ||||||| || || | || || | | || | || | || | || || ||| Sbjct 13417 TTTGATGTCAAACGTTTGATCGGCCGCAAGTTCACGGATA---CTGAAGTGCAGTCGGAT 13473 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || | || || | || | | || || || || | | ||| Sbjct 13474 ATCAAGCACTGGCCGTTCAAAGTGGCGCGCGGTCCCGAGGACAAGCCGCAAGTCGTGGTG 13533 Query 349502 GAATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGT 349560 | | || || ||| | || || || ||||| || || || || ||||| | | Sbjct 13534 CAGTTCAAGGGCGAATCGAAGACG-TTCCAGCCCGAGGAGATATCGTCCATGGTGCTGAT 13592 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 || ||| || ||||| || |||| | || | ||| | |||| || | || Sbjct 13593 CAAGATGCGCGAGATTGCAGAGGCATTCATCGGCAAGCAAGTGAAGAATGCGGTGGTGAC 13652 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || ||||| ||||| | ||||| || || || ||||| || |||||| Sbjct 13653 GGTGCCGGCGTATTTCAATGACTCGCAGCGCCAAGCGACCAAGGATGCCGGAGTCATTGC 13712 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || || || || || | || ||||| || || || ||||| || ||||| || || || Sbjct 13713 TGGTTTGAACGTGCTGCGTATCATTAACGAGCCGACCGCTGCTGCTATTGCCTACGG-CT 13771 Query 349741 TG---ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || | |||| ||| | || | || | || || || ||| |||| || || || Sbjct 13772 TGGACAAAAAAGGAGG---CGAGCACAACGTGTTG--ATCTTCGATCTAGGCGGCGGAAC 13826 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||||||||||| || || || | || || ||||| || || || || || |||||||| Sbjct 13827 GTTTGATGTATCGCTGCTTACGATCGAGGAAGGAATCTTCGAGGTGAAGGCTACTGCTGG 13886 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 |||||| || | || || ||||| ||||| || ||||| || | ||||| || Sbjct 13887 TGATACGCACTTGGGAGGTGAAGACTTTGACAACCGTCTAGTCGAGTTCTTTGTGGCCGA 13946 Query 349918 ATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 || ||||| || | | ||||| | || | | || |||| || || | Sbjct 13947 GTTCAAGCGCAAATACCACAGGGATATGTCGGCGAACCAGCGTGCTTTGCGCCGTCTCCG 14006 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 || ||||||||||| || ||||| | || || || | | || | | || || || Sbjct 14007 TACGGCGTGTGAACGGGCCAAGCGGACGTTGTCCACTTCGGCGCAGGCGTACATAGAGAT 14066 Query 350038 TGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 |||||| | |||| ||||||| ||||| || | || || ||||| || || || | Sbjct 14067 TGATTCGC-TGCTAGATGGCATTGATTTTAACTCGACCATCACCCGTGCGCGATTCGAGG 14125 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | | ||| || | || | || |||||||| || | |||| || || Sbjct 14126 ACCTCTGTTCCGAATTCTTCCGCAAGACGATGGATCCCGTCGCGCAAGTTCTACGTGACT 14185 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | ||| ||||||| || ||| | | || || || | || || || || || || |||| Sbjct 14186 CGAAATTGTCCAAGAACCAGGTGAACGAGGTGGTGCTGGTGGGCGGATCGACTCGCATTC 14245 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATT 350275 |||| || || ||||| | || | || || ||||| || | ||| || || || Sbjct 14246 CAAAGGTGCAGCAGTTGTTGGTGGACTACTTCAACGGCAAGGATCTGTTCAAG-TCGATC 14304 Query 350276 AATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAAT 350335 || || |||||||| || || || ||||| | || || || | ||| || ||| | | Sbjct 14305 AACCCCGATGAAGCGGTGGCGTACGGTGCCACCGTCCAAGCTGCCATTCTAAGTGGCAGT 14364 Query 350336 AAGAGTTC-----TAAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389 |||| |||||| | ||||| |||| || ||||| | || | ||||| Sbjct 14365 ---GGTTCGTCGTCCAAATTGCAGGATCTGCTACTGCTGGATGTCGCGCCCTTGTCGCTC 14421 Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCT 350449 ||||| ||||| | |||| ||| ||||| || || || | || | || || ||| Sbjct 14422 GGATTGGAAACCGCGGGTGGAGTTATGACCAAGCTCATCCCACGCAACACCACGGTTCCT 14481 Query 350450 ACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAA 350509 | || ||| || | || || || | || || || ||||| | || || || Sbjct 14482 GCTAAGAAGATGCAGTCGTTCTCGACGTACGCGGACAACCAGCCCGGCGTGCTGATCCAG 14541 Query 350510 GTATTTGAAGGTGAACG 350526 || |||||||| ||||| Sbjct 14542 GTGTTTGAAGGCGAACG 14558 >seq926 Length=12678 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || || || || || ||||| || || || || || || Sbjct 11873 CATGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 11814 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| || || ||||| ||||| Sbjct 11813 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 11754 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||||||||| || || || || ||||| || || || || Sbjct 11753 GGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTC 11694 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || ||||||||||| Sbjct 11693 CACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11643 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || || || | ||||||||| || || || || || || Sbjct 12101 CATGCCACCACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTC 12042 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || || || || || || || || ||||| || || ||||| ||||| Sbjct 12041 GCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGG 11982 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||||||||| || || || || ||||| || || || || Sbjct 11981 GGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTC 11922 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 11921 CACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 11871 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || | ||||||||| || || || || || || | || || || || Sbjct 12310 AGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCC 12251 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 12250 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 12191 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 |||||||| || || || || ||||| || || || || || || || || | ||| Sbjct 12190 TGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTC 12131 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || |||||||| Sbjct 12130 TTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12099 >seq3117 Length=1510 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1374 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 1315 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 1314 CCCTGCTTCTCCA 1302 >seq2910 Length=2216 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 802 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 743 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 742 CCCTGCTTCTCCA 730 >seq1953 Length=4447 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 2779 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 2838 Query 74548 TCGGGCA 74554 ||||||| Sbjct 2839 TCGGGCA 2845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515182548056903