Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq450 192 5e-44 seq13 84.2 2e-11 >seq450 Length=22763 Score = 192 bits (212), Expect = 5e-44 Identities = 433/643 (67%), Gaps = 17/643 (3%) Strand=Plus/Minus Query 29871 TCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACT 29930 ||| |||||||||||||| | ||| || || || ||||| || | || | |||| Sbjct 20124 TCTGCAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACT 20065 Query 29931 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29990 | || |||| || || | || || |||| || |||||| || | ||||||||| | Sbjct 20064 CGCCAGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAA 20005 Query 29991 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 30050 |||| || || || || || |||||||| | || | |||||| | ||||||||| |||| Sbjct 20004 TGTTGAATGGCACACCAAGTCCCATGTCAGCAGAGCGCTGGTACATCTGACACGATAGCT 19945 Query 30051 CTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCA 30110 |||| || |||||||||||||| | |||||| || || || ||||| | | Sbjct 19944 CTCCATCAGCAACGTAAAACTGACAGAACATGTGGCAGGGCGGCAGCGCCATCTCGTTGA 19885 Query 30111 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CT 30165 || ||||||||||| | | | ||| || | ||| |||||| |||| || Sbjct 19884 GATCAGCAGGGTTCCAGGCCGAAAGTACGATCCGGCGGTCGGTTGGGTTCGTTCGCAGCT 19825 Query 30166 GATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCA 30224 || | || | || ||| ||||| || || | | ||| || || || Sbjct 19824 TGTGAATCACCTCAGC------CAGTTGATCTACACCTTGATCAGTGTAATCCGCATGCA 19771 Query 30225 TGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30284 |||||||||| | || || ||||| | |||||||||||| |||||||| || ||||| | Sbjct 19770 TGTCCGTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCAC 19711 Query 30285 CCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 30343 | |||| | |||| | ||||| | | |||||| | || | || || ||| ||||| Sbjct 19710 CAACTTCTC-GTGCCTGCAGCCCTCGACTATCCAAATACTCACGCGATCCATTGCCGTCC 19652 Query 30344 CAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 30403 ||||| | | |||||| ||| | | | ||| || |||| ||||||| Sbjct 19651 CAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCACTGGTGTCGCCACTGATGAACCAC 19592 Query 30404 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTG 30462 || ||||||||| | || | ||| || || ||||||||||| || || ||||| || Sbjct 19591 AGAAGCTCCTCCGCCACACCGCGCCAGAACACTCTCTTGGTCGTCAGCAGTGGGAACATG 19532 Query 30463 T--CCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACA 30503 | || | || | | |||| ||| | |||||||| |||| Sbjct 19531 TTATCCCTCAGACTGAACCTCATCTGCGCTCCAAACACCGACA 19489 >seq13 Length=65522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 49127 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49186 ||| ||||| || ||||| | |||||| | |||||||| ||| | || ||||| || Sbjct 47101 GTTGAACAGAATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATGACTCCGGCGCCAGT 47160 Query 49187 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 49246 ||| || || || || || || ||||| || | || ||||||| | ||||| ||| Sbjct 47161 GTCGATGAACTTCTTAAGCGCAAGGCCAGAGCGAGGCGCCACCCGGGCGTAGCAGCCGTC 47220 Query 49247 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGTCGAAGGAGGGGACCACGAC 49306 ||||| | | ||||||||||||| || ||| || || || | |||| ||| | Sbjct 47221 GGGCACAGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCTGCAGGGATGACGGC 47280 Query 49307 CGGGTGAGCGGCCGCCAGGTC 49327 || ||||||| ||||| Sbjct 47281 GTCGTAGGCGGCCGAGAGGTC 47301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406292072988492