Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq926 159 3e-34 seq1018 150 2e-31 seq427 149 5e-31 >seq926 Length=12678 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 11870 CATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 11929 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || |||||||| ||||| |||||||| || || || || Sbjct 11930 GGACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 11989 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| ||| | || | ||| ||||| Sbjct 11990 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12049 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || || || |||| ||||| |||| |||||||| Sbjct 12050 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 12100 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 11643 ATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 11702 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| || |||||||| ||||| |||||||| || || || || Sbjct 11703 GACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 11762 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | ||| |||||| Sbjct 11763 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 11822 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || |||| ||||| |||| |||||||| Sbjct 11823 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGCAT 11872 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 12098 CATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 12157 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || |||||||| ||||| |||||||| || || || || Sbjct 12158 GGACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12217 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| ||| | || | ||| ||||| Sbjct 12218 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12277 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| || || || |||| | ||| |||| || || Sbjct 12278 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTTCGTCTGCGCGGCGG 12325 >seq1018 Length=11520 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 56 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTC 115 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || || ||||| ||||| |||||||| || || || || Sbjct 116 GGACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCA 175 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || |||| ||| | || | ||| ||||| Sbjct 176 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 235 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 236 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 283 >seq427 Length=22329 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| ||||| Sbjct 227 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 168 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| || || ||||| ||||| |||||||| || || || || Sbjct 167 GACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 108 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| ||| | || | ||| |||||| Sbjct 107 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 48 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | || |||| ||||| |||| ||||| Sbjct 47 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434898279587520