Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq450 134 1e-26 >seq450 Length=22763 Score = 134 bits (148), Expect = 1e-26 Identities = 406/626 (65%), Gaps = 12/626 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || || ||||||||||| || | |||| |||| || |||| |||||||| |||||| Sbjct 19536 TTCCCACTGCTGACGACCAAGAGAGTGTTCTGGCGCGGTGTGGCGGAGGAGCTTCTGTGG 19595 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG-TCCCGGGGGGTGA-----AGATC 34333 ||| | || || | |||||| | || | || | | | | || | ||| Sbjct 19596 TTCATCAGTGGCG------ACACCAGTGCGCACACGCTGCAGCAGAAGGACATTCACATC 19649 Query 34334 TGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAG 34393 ||||||| | || || || || | | |||| | || ||| | | | || || | Sbjct 19650 TGGGACGGCAATGGATCGCGTGAGTATTTGGATAGTCGAGGGCTGCAGGCACGAGAAGTT 19709 Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || ||| | || ||||| || |||||||||||| | || ||||| || | || || Sbjct 19710 GGTGACCTTGGGCCGGTGTATGGGTTCCAGTGGCGCCATTTTGGTGCCAAATACACGGAC 19769 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 | | ||||| || | | || || | || || ||| | ||||| ||| || Sbjct 19770 ATGCATGCGGATTACACTGATCAAGGTGTAGATCAACTGGCTGAGGTGATTCACAAGCTG 19829 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 |||||| ||| | ||||||| | | || |||||||| |||||| Sbjct 19830 CGAACGAACCCAACCGACCGCCGGATCGTACTTTCGGCCTGGAACCCTGCTGATCTCAAC 19889 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 ||||||||| || || ||||||| |||| || || ||||| || |||| ||||| Sbjct 19890 GAGATGGCGCTGCCGCCCTGCCACATGTTCTGTCAGTTTTACGTTGCTGATGGAGAGCTA 19949 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || || ||| | || || || || | |||||||| | || ||||| ||||||||||| Sbjct 19950 TCGTGTCAGATGTACCAGCGCTCTGCTGACATGGGACTTGGTGTGCCATTCAACATTGCC 20009 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTG 34753 || ||||| ||||||||| || | || || || | || || ||||| ||| | Sbjct 20010 AGCTACGCGCTGCTCACGAGATTGGTGGCGCAGGTGGCTGGACTGAAACCTGGCGAGTTC 20069 Query 34754 GTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813 | ||| | || || || ||| | || ||||||||| | || | ||| | || || Sbjct 20070 ATTCATGTTATTGGCGACGCACATGTGTATCTGAACCACGTGGAACCGCTGCAGAAACAA 20129 Query 34814 CTGCAACGAGAGCCCCGACCGTTCCC 34839 || |||| ||| || || || || Sbjct 20130 CTTACACGAACGCCACGCCCATTTCC 20155 Score = 134 bits (148), Expect = 1e-26 Identities = 406/626 (65%), Gaps = 12/626 (2%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 || || || || ||| |||| || || || | ||| | || | ||||||||| || Sbjct 20155 GGAAATGGGCGTGGCGTTCGTGTAAGTTGTTTCTGCAGCGGTTCCACGTGGTTCAGATAC 20096 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCG 6625 | ||| || || || | ||| | | ||| ||||| || || | || || || Sbjct 20095 ACATGTGCGTCGCCAATAACATGAATGAACTCGCCAGGTTTCAGTCCAGCCACCTGCGCC 20036 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 | || ||||||||| ||||| || ||||||||||| ||||| || | |||||||| Sbjct 20035 ACCAATCTCGTGAGCAGCGCGTAGCTGGCAATGTTGAATGGCACACCAAGTCCCATGTCA 19976 Query 6686 CCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGG 6745 | || || || || | ||| || || ||||| |||| || ||||| || || |||| Sbjct 19975 GCAGAGCGCTGGTACATCTGACACGATAGCTCTCCATCAGCAACGTAAAACTGACAGAAC 19916 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 ||||||| || || ||||||||| |||||| |||||||| || | | ||| Sbjct 19915 ATGTGGCAGGGCGGCAGCGCCATCTCGTTGAGATCAGCAGGGTTCCAGGCCGAAAGTACG 19856 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCT 6865 |||| | ||| |||||| || ||| ||||| | ||| || || | Sbjct 19855 ATCCGGCGGTCGGTTGGGTTCGTTCGCAGCTTGTGAATCACCTCAGCCAGTTGATCTACA 19796 Query 6866 CCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 || || | | || ||||| | | || || | || ||||| || | ||||||| Sbjct 19795 CCTTGATCAGTGTAATCCGCATGCATGTCCGTGTATTTGGCACCAAAATGGCGCCACTGG 19736 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGA 6985 ||||| || ||||| || | ||| || | || || | | | ||| || | |||| | Sbjct 19735 AACCCATACACCGGCCCAAGGTCACCAACTTCTCGTGCCTGCAGCCCTCGACTATCCAAA 19676 Query 6986 AAGTCTCGAGACCCGTGAGCGTCCCAGATCT-----TCACCCCCCGGGA-CGAGAGCTCC 7039 | || || || || | |||||||||| | || | | | | || | || | Sbjct 19675 TACTCACGCGATCCATTGCCGTCCCAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCA 19616 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 |||||| | || || | ||||||||| |||||||| |||| || |||| || Sbjct 19615 CTGGTGT------CGCCACTGATGAACCACAGAAGCTCCTCCGCCACACCGCGCCAGAAC 19562 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAA 7125 || | || ||||||||||| || || Sbjct 19561 ACTCTCTTGGTCGTCAGCAGTGGGAA 19536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448241662260720