Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq450 127 2e-24 seq13 100 2e-16 >seq450 Length=22763 Score = 127 bits (140), Expect = 2e-24 Identities = 414/642 (64%), Gaps = 23/642 (4%) Strand=Plus/Minus Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 ||||||||||||||||| || || || || || || || | || | ||||| || Sbjct 20120 CAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACTCGCC 20061 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 |||| || || | || || |||| || |||||| || | ||||||||| ||||| Sbjct 20060 AGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAATGTT 20001 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC 29826 || ||||| || || |||||||| | || | |||||| | ||| ||||| |||||||| Sbjct 20000 GAATGGCACACCAAGTCCCATGTCAGCAGAGCGCTGGTACATCTGACACGATAGCTCTCC 19941 Query 29827 GTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAA 29883 || ||||||||||||| ||||| ||||| || || || ||||| | Sbjct 19940 ATCAGCAACGTAAAACTGACAGAACATG---TGGCAGGGCGGCAGCGCCATCTCGTTGAG 19884 Query 29884 GTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CTG 29938 || ||||||||||| | | | ||| || | ||| |||||| |||| || Sbjct 19883 ATCAGCAGGGTTCCAGGCCGAAAGTACGATCCGGCGGTCGGTTGGGTTCGTTCGCAGCTT 19824 Query 29939 ATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNN 29997 || | || | || ||| ||||| || || | | ||| || | Sbjct 19823 GTGAATCACCTCAGC------CAGTTGATCTACACCTTGATCAGTGTAATCCGCATGCAT 19770 Query 29998 NNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30057 | ||||| | |||||||||||| |||||||| || ||||| || Sbjct 19769 GTCCGTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCACC 19710 Query 30058 CTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30116 |||| | |||| | ||||| | | |||||| | || | || || ||| |||||| Sbjct 19709 AACTTCTC-GTGCCTGCAGCCCTCGACTATCCAAATACTCACGCGATCCATTGCCGTCCC 19651 Query 30117 AGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30176 |||| | | |||||| ||| | | | ||| || |||| |||||||| Sbjct 19650 AGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCACTGGTGTCGCCACTGATGAACCACA 19591 Query 30177 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTGT 30235 | ||||||||| | || | ||| || || ||||||||||| || || ||||| ||| Sbjct 19590 GAAGCTCCTCCGCCACACCGCGCCAGAACACTCTCTTGGTCGTCAGCAGTGGGAACATGT 19531 Query 30236 --CCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACA 30275 || | || | | ||||| ||| | ||||||| |||| Sbjct 19530 TATCCCTCAGACTGAACCTCATCTGCGCTCCAAACACCGACA 19489 >seq13 Length=65522 Score = 100 bits (110), Expect = 2e-16 Identities = 187/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| ||| || | |||||| || || | ||| || | || || | ||| | Sbjct 47031 ACTCG-ATCTTCTCCAGAATGAGCTGCGCAATGCGGTCCCCGCGCTTAACAGGGAAGTCT 47089 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 ||| | | ||| ||||| || ||||| | |||||| | |||||||| ||| | || Sbjct 47090 TCAGCCGCGTGGTTGAACAGAATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATGACT 47149 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || ||||| || || || ||||| || | || ||||||| | || Sbjct 47150 CCGGCGCCAGTGTCGATGAACTTCTTAAGCGCAAGGCCAGAGCGAGGCGCCACCCGGGCG 47209 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| ||||| | | | ||||||||||| || ||| || ||||| | Sbjct 47210 TAGCAGCCGTCGGGCACAGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCTGCA 47269 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTC 50132 |||| ||| || || ||||||| ||||| Sbjct 47270 GGGATGACGGCGTCGTAGGCGGCCGAGAGGTC 47301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406144879628086