Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq450 192 4e-44 seq13 89.7 4e-13 >seq450 Length=22763 Score = 192 bits (212), Expect = 4e-44 Identities = 433/643 (67%), Gaps = 17/643 (3%) Strand=Plus/Minus Query 27137 TCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACT 27196 ||| ||||||||||||||| | ||| || || || ||||| || | || | |||| Sbjct 20124 TCTGCAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACT 20065 Query 27197 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 27256 | || |||| || || | || || |||| || |||||| || | ||||||||| | Sbjct 20064 CGCCAGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAA 20005 Query 27257 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 27316 |||| || || || || || |||||||| | || | |||||| | ||||||||| |||| Sbjct 20004 TGTTGAATGGCACACCAAGTCCCATGTCAGCAGAGCGCTGGTACATCTGACACGATAGCT 19945 Query 27317 CTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCA 27376 ||||||| |||||||||||||| | |||||| || || || ||||| | | Sbjct 19944 CTCCATCAGCAACGTAAAACTGACAGAACATGTGGCAGGGCGGCAGCGCCATCTCGTTGA 19885 Query 27377 AGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT-GTTC----CT 27431 || ||||||||||| | | | ||| || | ||| |||||| |||| || Sbjct 19884 GATCAGCAGGGTTCCAGGCCGAAAGTACGATCCGGCGGTCGGTTGGGTTCGTTCGCAGCT 19825 Query 27432 GATG-AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCA 27490 || | || | || ||| ||||| || || | | ||| || | || Sbjct 19824 TGTGAATCACCTCAGC------CAGTTGATCTACACCTTGATCAGTGTAATCCGCATGCA 19771 Query 27491 TGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTC 27550 |||||||||| | || || ||||| | ||| |||||||| |||||||| || ||||| | Sbjct 19770 TGTCCGTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCAC 19711 Query 27551 CCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCC 27609 | |||| | |||| | ||||| | | |||||| | || | || || ||| ||||| Sbjct 19710 CAACTTCTC-GTGCCTGCAGCCCTCGACTATCCAAATACTCACGCGATCCATTGCCGTCC 19652 Query 27610 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 27669 ||||| | | |||||| ||| | | | ||| || |||| ||||||| Sbjct 19651 CAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCACTGGTGTCGCCACTGATGAACCAC 19592 Query 27670 AGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAACTG 27728 || ||||||||| | || | ||| || || ||||||||||| || || ||||| || Sbjct 19591 AGAAGCTCCTCCGCCACACCGCGCCAGAACACTCTCTTGGTCGTCAGCAGTGGGAACATG 19532 Query 27729 T--CCCTTGAGGCCGTACCTGGCCTGAGAACCAAACACGGACA 27769 | || | || | | |||| ||| | |||||||| |||| Sbjct 19531 TTATCCCTCAGACTGAACCTCATCTGCGCTCCAAACACCGACA 19489 >seq13 Length=65522 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 44919 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 44978 ||| ||||| || ||||| | |||||| | |||||||| ||| | || ||||| || Sbjct 47101 GTTGAACAGAATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATGACTCCGGCGCCAGT 47160 Query 44979 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 45038 ||| || || || || || || ||||| || | || ||||||| | ||||| ||| Sbjct 47161 GTCGATGAACTTCTTAAGCGCAAGGCCAGAGCGAGGCGCCACCCGGGCGTAGCAGCCGTC 47220 Query 45039 GGGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCCCTGCC 45080 ||||| | ||||||||||||||| || ||| || |||| Sbjct 47221 GGGCACAGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCC 47262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369490533031331