Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314435.1_202015- 10-14] 3,701 sequences; 37,340,450 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1018 161 2e-34 seq926 161 2e-34 seq427 161 2e-34 seq482 140 7e-28 seq130 122 2e-22 seq699 105 1e-17 seq116 98.7 2e-15 seq517 95.1 3e-14 seq61 87.8 4e-12 >seq1018 Length=11520 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 283 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 224 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 223 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 164 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || ||||| ||||| ||| | ||||| | |||||| | || || Sbjct 163 ATGCCTTCCTTGTCCTGAATCTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 105 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 104 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57 >seq926 Length=12678 Score = 161 bits (178), Expect = 2e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 11869 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 11810 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 11809 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 11750 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||||| ||| | ||||| | |||||| | || || Sbjct 11749 ATGCCTTCCTTGTCCTGAATTTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 11691 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| || |||| ||||| ||||| |||||||| || Sbjct 11690 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCATCTT 11640 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || || || || || |||||||||||||| Sbjct 12097 CCACCACGCAGACGCAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 12038 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 12037 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 11978 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||||| ||| | ||||| | |||||| | || || Sbjct 11977 ATGCCTTCCTTGTCCTGAATTTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 11919 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 11918 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 11871 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| ||||| ||||| || || || || || |||||||||||||| Sbjct 12325 CCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 12266 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 12265 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 12206 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || || || ||||| ||| | ||||| | |||||| | || || Sbjct 12205 ATGCCTTCCTTGTCCTGAATTTTCTGCTTG-ACGTTGTCGATCGAGTCCGACGGCTCCAC 12147 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 12146 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12099 >seq427 Length=22329 Score = 161 bits (178), Expect = 2e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| || || |||||||||||||| Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| ||| Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| || ||||| ||| || ||| | ||||| | |||||| | || || Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGC-TTGACGTTGTCGATCGAGTCCGACGGCTCCAC 179 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| || |||| ||||| ||||| |||||||| || Sbjct 180 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTT 230 >seq482 Length=22300 Score = 140 bits (154), Expect = 7e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 19057 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 19116 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| ||| || || |||||||| ||||| || ||| || ||| | || Sbjct 19117 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGC-TTGACGTTGTC 19175 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 19176 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 19235 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 19236 GATCTGCAT 19244 >seq130 Length=37012 Score = 122 bits (134), Expect = 2e-22 Identities = 564/882 (64%), Gaps = 25/882 (3%) Strand=Plus/Minus Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594 |||||| ||||| | | |||| | ||| | ||||| |||||||| | ||| |||| || Sbjct 16087 CTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTG 16028 Query 229595 GACCACGGAGGAAGTCCCCCTAAATGCA-GACGTCGTCGACTGGCGCGAGAAACTCAACG 229653 ||| | ||||| | || |||| ||| || |||||| | ||| |||| | Sbjct 16027 GACGGCCGAGGAGCTGGATCTCG-TGCACGACCTCAAGGACTGG---GTGAACCTCACGG 15972 Query 229654 ACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGTATCG 229713 || | || ||||| |||||||||||| | || | || ||||| | || ||||| | Sbjct 15971 ACAACGAGCGCCACTTCATCAAGCACGTGCTGGCCTTCTTTGCTGCCAGTGATGGTATAG 15912 Query 229714 TGATGGAAAACTTGCAGACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACGGCAGT 229773 | | || |||||| | ||||||||| ||| || || || ||||| || | Sbjct 15911 TCAACGAGAACTTGGCCATGAACTTCAGCAACGAGGTGCAAGTGCCTGAGGCTCGCTGCT 15852 Query 229774 TTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCTTATTG 229833 | |||| | ||||| || || | || ||||| ||| | || ||||||| Sbjct 15851 TCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTTATTG 15792 Query 229834 ACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAACATCC 229893 || || ||| ||| ||| || | ||| | ||||| || | |||| Sbjct 15791 ACACGTACATCAAGGACATTGTCGAGAAAACCCACCTGCTGCGTGCCATTGAGACTATCC 15732 Query 229894 CGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGGCTGGAACCCAGTAAATCGTTTG 229953 || ||||| || ||||| ||||| | |||||| || || | |||| Sbjct 15731 CGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCCGCGCGTGTCGTCCT 15672 Query 229954 ---CAGAGCGTCTCGTCGCGTGGGTGTGC-GTTGAGGGTATTCTGTTCTCCGGGAGTTTC 230009 | || || || | || | | ||| || |||||||| | ||||| || ||| Sbjct 15671 ACCCGGAACGGCTGCTGGCCTTTGC-TGCAGTGGAGGGTATCTTCTTCTCGGGCTCCTTC 15613 Query 230010 TGCGCCATCTTTTGGCTACGCAACAAGGGCG---TCATGCCCGGGCTCGGTCTGTCGAAC 230066 ||| ||||||| ||||| ||| ||| | | ||||||| || || | | |||||| Sbjct 15612 TGCTCCATCTTCTGGCT---CAAGAAGCGTGGTCTCATGCCTGGTCTAAGCTTCTCGAAC 15556 Query 230067 GAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCGAAG 230126 || |||||||| | ||||| || | ||| | | || | | || |||| || ||| Sbjct 15555 GAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTCATGTACTCCAAG 15496 Query 230127 CTAAATAACAAACTACCTTTCGAAACG-GTGAAACAAATCGTCACAGAAGTAGTTGCAAA 230185 || ||||| || || || || ||| | | ||||| || | || | | Sbjct 15495 CTGGTCAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGTGACGCTGTGGTGAT 15437 Query 230186 TGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCT 230245 || | |||||| | ||||| | | ||| | || ||||||||||| | | || Sbjct 15436 CGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTCGAGCTCATCGGCATGAACTCGGGGCT 15377 Query 230246 CATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGG---GTACGA 230302 |||| | || || || || ||||| ||||| ||| | || |||| || || | | Sbjct 15376 CATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTGGGAGTGTCCAA 15317 Query 230303 GAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAA 230362 || | || ||| ||||||||| |||| | ||||| | || || || ||||| || Sbjct 15316 GA---TCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAA 15260 Query 230363 AACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGC 230403 || ||||||||||| |||||||| |||| || || ||||| Sbjct 15259 GACCAACTTCTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGC 15218 >seq699 Length=15708 Score = 105 bits (116), Expect = 1e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| |||| |||| ||| || Sbjct 8250 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGG 8191 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| |||||||| || | |||||| || ||| Sbjct 8190 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGC 8131 Query 316282 TTCCAAAC 316289 ||||| || Sbjct 8130 TTCCACAC 8123 >seq116 Length=38388 Score = 98.7 bits (108), Expect = 2e-15 Identities = 289/440 (66%), Gaps = 4/440 (1%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || |||||||| | |||||| || || | | || || || || || Sbjct 13297 AGACCAACCTGTACCAATACCCTCTGCACCATTGACAAGCAGCATTGGAATGATAGGCAC 13356 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 || ||| |||| |||| |||||| |||| ||| ||||| ||||| || Sbjct 13357 GTAGTATACGGGTTCAACCGGGAAACCATCATCGTCGGCGTAGGCCAACAGGGCATCGTC 13416 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 || ||| ||| || || || | || ||||||||| || | | ||| Sbjct 13417 TTCTTCGGGGAATACCAGGCGAGTGTGCTTTTGAAGCAACGTGAAAATATAACGAGGACT 13476 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGT- 273858 || ||||| ||||||||||||| | |||||||||||| || || |||| Sbjct 13477 AGCGGCATCCTTACCACCTTGCAGCCGTGTACCAAACTGACCGGATGGATACAG-CAGTG 13535 Query 273859 TTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATA 273918 | |||||| || || | ||||| |||||||| || || ||| || || ||| Sbjct 13536 GGAGATTGTTGGAGCCCACAAAGTCCTGGGCCATATTAACAATCGTCGAGTGCAGCGATG 13595 Query 273919 CCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAACTGAGCAACCTTC 273977 | || |||||||| || || ||||||| || | | |||||| | || || |||||| Sbjct 13596 CTTCACCGTGGTGGTAAGCTGTGTGTTC-GCTACAGTAACCAGCCAGTTGTGCCACCTTC 13654 Query 273978 ACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTG 274037 || |||||||| | || ||||| || | | | | ||||| ||||| || || Sbjct 13655 ACCTCGCTCGTTAGTTTGCGCTTCAAGCAAGCAAAAAGAACCTTACGCTGGGAAATTTTC 13714 Query 274038 AACCCATCAACGACCGATGG 274057 | || ||||| ||||| || Sbjct 13715 AGACCGTCAACCACCGACGG 13734 >seq517 Length=26215 Score = 95.1 bits (104), Expect = 3e-14 Identities = 215/322 (67%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 273584 AATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGA 273643 |||||| || | ||||||||| | || || | |||||||| || || ||||| Sbjct 8496 AATAATGTCATGAGGGTTGTACGTGGGGACAGAGCTGGACCAACCCGTTCCGATACCATC 8555 Query 273644 AGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATC 273703 | ||| || || || | |||||||||| |||| || |||| ||||||||| | Sbjct 8556 ACTACCGTTGACAAGCACCATCGGGATAATCGGGATGTACCATTCCGGCTCAATTGACTG 8615 Query 273704 ACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGT 273763 || || || | || ||||||| || | | | |||| | || | | ||||| Sbjct 8616 TCCGTCTTCATCCAGATACTTCAGCACATCGTTATCCAGGGGATCGTAGATACGACGCGT 8675 Query 273764 CTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAG 273823 | | | || || |||||||| || | || || || ||||| ||||| || Sbjct 8676 GAGCTGCTCCAAGTTGGTGAAAATATAACGAGCGCTGGCTGCATCCTTACCACCCATCAA 8735 Query 273824 CCTCGAACCAAACTGACCCTCGGG---CAGTAGCCAGTTTATGTTGTTGCTACCGACGTA 273880 || || ||| |||||||| ||| ||| || || || |||||||| || ||| | Sbjct 8736 CCGCGTACCGAACTGACCGATGGGAGACAGGAG---GTGGATATTGTTGCTTCCAACGAA 8792 Query 273881 ATCCTGAGCCATATTCACGATA 273902 |||||| ||||||||||||||| Sbjct 8793 ATCCTGCGCCATATTCACGATA 8814 >seq61 Length=46246 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || || ||||| || | || || || |||||||||||||| | Sbjct 12326 ACCACCGCGCAGACGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 12267 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 12266 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 12207 Query 282992 AATACC 282997 || || Sbjct 12206 GATTCC 12201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046689564608454