Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq674 156 9e-33 seq2426 91.5 3e-13 >seq674 Length=22689 Score = 156 bits (172), Expect = 9e-33 Identities = 674/1056 (64%), Gaps = 51/1056 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 15143 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 15084 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 15083 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 15024 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| | |||| || | | ||||| |||| ||| || || || Sbjct 15023 CTTCCACACCTGGCCGCTCGTGGGCTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGA 14964 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| |||| ||| |||| | | ||| || || || Sbjct 14963 CTTACCAGCACCGTTAGGTCCCAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCAC-- 14907 Query 319223 GGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 319282 || || ||||| | | || |||||||| |||| | | | ||| | Sbjct 14906 GGAGAT----GTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTA-CGAACAGTTC 14852 Query 319283 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 319341 || || ||||||| |||| |||| | | ||||| |||||||| ||| Sbjct 14851 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCGGGCTCCGGG 14792 Query 319342 AACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 319398 ||| | || | | ||| || ||| || ||||||| | | || || | Sbjct 14791 AACGTGAACTTCACGTTCTCCGACTC---CAGCTCGTAGTAGGCCTTAGCCTCAGGCTTC 14735 Query 319399 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 319458 | || |||||||| ||||| || |||||||| |||| ||||| || | ||||| Sbjct 14734 TGCTCCACGAACTTGGACAAGTTGCCCTTGTAGATCTTGAGCTTACGG---GTCTCGTAG 14678 Query 319459 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 319518 ||||| || ||||| || | ||| ||||| ||||||||||| ||||| || | | | Sbjct 14677 TGGATGATGTTCGTGCAGACCGTGTCAAGGAAACCGGAGTCGTGCGACACCATGATGGAG 14618 Query 319519 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGA 319578 | |||| | || | ||| ||| | || ||| ||||| ||| | Sbjct 14617 GTCACGTTGGTCAGACTCGTCAAGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAAG 14558 Query 319579 TGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 319638 ||||| |||||||| ||||| ||||| | | || ||| | ||||| ||||| || || Sbjct 14557 TGGTTCGTCGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGAAGCATGGCACGGGCCAGC 14498 Query 319639 GCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAA----TTGGG---GCAGATTGGCG 319691 |||||||||| ||||| || |||||||| ||| | |||| ||| | |||| Sbjct 14497 TCGAGTTTCATCTTCCAACCACCGGAAAGGGTGCCCACGGCCTGGGCCTGCATCTCGGCG 14438 Query 319692 CTCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 319751 | ||||| || | || || ||| || | || | | |||| Sbjct 14437 GT-------GAAGCCCACACCGGCAAGGGTGTCCTCGACCTCCTTGCGGG---GAGTGTT 14388 Query 319752 TTCCTTTACTTGTTCATCATTGGCA---ATGAAGTCAATGATAGCCGTGTTAGAATCGGA 319808 ||| | | || |||| |||| |||||||| | | | | | || || || Sbjct 14387 ---CTTCA---GGTCCTCATCGGCAAGGATGAAGTCCACAACGGACAGTTCAGCCTCCGA 14334 Query 319809 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTC 319868 | | || | ||| || ||| | |||| || | | || |||||| || || Sbjct 14333 AGCCTGCAGGTTGTGCTCGACGAACACAGTCTTGAGCTCGTCACGGCTGGGGAAGCCCTC 14274 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 14273 AAGCTGGCCGTTGGAGATGGCGCGCATGAGCGTCGACTTACCACAACCGTTGGGACCGCA 14214 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||| |||| ||| || || ||| | || | ||||||||| | ||| | || Sbjct 14213 CAGACCGTAACGGTGTCCACGCTTGAGGCGAAGACGAGCGTTGTTCAGCAAAATCATACC 14154 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 ||| || || || || || || || | ||||| || Sbjct 14153 ACCGTAGGCAAGCGAGAACTCGCAGTTGCACAGGTC 14118 >seq2426 Length=2822 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 2138 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 2079 Query 165771 CCACG 165775 ||||| Sbjct 2078 CCACG 2074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057774001618070