Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq412 192 7e-44 >seq412 Length=22564 Score = 192 bits (212), Expect = 7e-44 Identities = 407/600 (68%), Gaps = 22/600 (4%) Strand=Plus/Minus Query 145680 CTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC 145739 || ||| || ||||||||||| || || || || ||||| || | || || ||||| || Sbjct 20166 CTGCAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACTC 20107 Query 145740 CCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTAT 145799 || || | || || | | || || |||| || ||||| | ||||||||| || Sbjct 20106 GCCAGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAAT 20047 Query 145800 GTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTC 145859 |||||| ||||| || || |||||||| | ||||||||||||| ||| || || ||||| Sbjct 20046 GTTGAATGGCACACCAAGTCCCATGTCAGCAGAGCGCTGGTACATCTGACACGATAGCTC 19987 Query 145860 CCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAG 145919 || | || ||||| ||||| || | | ||||||||||||||| ||||| || || Sbjct 19986 TCCATCAGCAACGTAAAACTGACAGAACATGTGGCAGGGCGGCAGCGCCATCTCGTTGAG 19927 Query 145920 GTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGAT 145976 || || ||||||||||| | || |||| ||| || ||| |||||| | | Sbjct 19926 ATCAGCAGGGTTCCAGGCCGAAAGTACGA---TCCGGCGGTCGGTTGGGTTCGTTCGCAG 19870 Query 145977 CTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GT 146035 || |||| || || || || || || || | |||||| | | || | || Sbjct 19869 CTTGTGAATCACCTCAGCCAGTTGATCTACACCTTGATCAGTGTAATCCG-CATGCATGT 19811 Query 146036 CCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGG 146095 || ||| ||| || || || | |||||||||||| || || ||||| ||||| || Sbjct 19810 CCGTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCACC-A 19752 Query 146096 GCTCCCTGTGCC-CCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAG 146154 || | ||||| |||||| | | | | || || || || ||| |||||||| Sbjct 19751 ACTTCTCGTGCCTGCAGCCCTCGACTATCCAAATACTCACGCGATCCATTGCCGTCCCAG 19692 Query 146155 ATCTTGACGCCCCTC-GC-----GGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAAC 146208 || | | | || || || | | || || ||| ||| || ||||||||| Sbjct 19691 ATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCACTGGTGTC------GCCACTGATGAAC 19638 Query 146209 CAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC 146268 || || ||||| || || || | |||||| || |||||||| |||||||| |||||| Sbjct 19637 CACAGAAGCTCCTCCGCCACACCGCGCCAGAACACTCTCTTGGTCGTCAGCAGTGGGAAC 19578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590049590083560