Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq141 329 3e-85 seq911 154 2e-32 seq1010 149 6e-31 seq414 149 6e-31 seq688 131 2e-25 seq67 98.7 1e-15 >seq141 Length=36708 Score = 329 bits (364), Expect = 3e-85 Identities = 439/602 (73%), Gaps = 6/602 (1%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| |||||| | |||||||| || | | ||| |||||| |||||| Sbjct 15812 GAGAACCCCAACCGCTTCGTGCTCTTCCCCATTCAGGAGCACGACGTGTGGCAGATGTAC 15753 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || ||||||||||| || |||||||| | ||||||| |||| || || || | | | || Sbjct 15752 AAGAAGGCCGAGGCTTCCTTCTGGACGGCCGAGGAGCTGGATCTCGTGCACGACCTCAAG 15693 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||| | | | | |||||||||||||| ||||||||||||||||||||||| || Sbjct 15692 -GACTGGGTGAACCTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCCTTCTT 15634 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 || ||||| || || || ||||||||||| ||| | | ||| | |||||||| Sbjct 15633 TGCTGCCAGTGATGGTATAGTCAACGAGAACTTGGCCATGAACTTCAGCAACGAGGTGCA 15574 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 ||| | ||||| || |||||||||||||| ||||||||||| |||||| | |||||||| Sbjct 15573 AGTGCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGA 15514 Query 116890 AATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGAGAAGCTCCGTTTGT 116948 |||| ||| || || ||||||||| | | | | | ||||| || || Sbjct 15513 GGTGTACTCGCTGCTTATTGACACGTACATCAAGGACAT-TGTCGAGAAAACCCACCTGC 15455 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 || ||||| ||||| || ||||| ||| | |||| ||| | |||||||| ||| Sbjct 15454 TGCGTGCCATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGT 15395 Query 117009 TCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || || || | | | | ||| | || || ||| ||||||| || || || ||||| Sbjct 15394 GCGACCCGC-GCGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGT 15336 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| |||||| ||| | |||| || ||||||||||| || || |||||||| Sbjct 15335 ATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCT 15276 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || || | ||| |||||||||||| | | |||||||| |||| ||||| ||| Sbjct 15275 GGTCTAAGCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCC 15216 Query 117188 TG 117189 || Sbjct 15215 TG 15214 >seq911 Length=12855 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | Sbjct 11821 AAGATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 11880 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| ||||| | ||||||| ||||| || ||||| ||| | || Sbjct 11881 TCGGACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGA 11939 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 11940 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 11999 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 12000 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 12051 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | | Sbjct 12052 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 12111 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | ||||||| ||||| || ||||| ||| | ||||| Sbjct 12112 GACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12170 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 12171 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12230 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| |||| || | || ||| Sbjct 12231 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 12279 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | | Sbjct 12280 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 12339 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | ||||||| ||||| || ||||| ||| | ||||| Sbjct 12340 GACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12398 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 12399 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12458 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||| || ||| | || || | ||||| Sbjct 12459 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTTCGTCTGCGCGGCGG 12506 >seq1010 Length=11520 Score = 149 bits (164), Expect = 6e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | | Sbjct 57 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 116 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | || |||| ||||| || ||||| ||| | ||||| Sbjct 117 GACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCA 175 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 176 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 235 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | |||||||| || ||| |||| Sbjct 236 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 271 >seq414 Length=22499 Score = 149 bits (164), Expect = 6e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| || | Sbjct 230 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 171 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| ||||| | || |||| ||||| || ||||| ||| | || Sbjct 170 TCGGACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGA 112 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 111 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 52 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||| | |||||||| || ||| |||| Sbjct 51 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 13 >seq688 Length=17951 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 3545 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 3604 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||||| | | |||| ||||| | ||||| | ||||| || |||||||| | ||||| Sbjct 3605 GACAGCATTGACAACG-TCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCA 3663 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || |||||||| Sbjct 3664 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACAA 3723 Query 40869 CATCCAGAAGG 40879 ||||||||||| Sbjct 3724 CATCCAGAAGG 3734 >seq67 Length=45614 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 11523 GGAATCCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 11582 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || ||||| || ||| |||| || | Sbjct 11583 ACTCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGTCTGCGC 11642 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 11643 GGTGGTGGC 11651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195441954640