Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq115 149 1e-30 seq141 98.7 2e-15 seq1085 87.8 4e-12 >seq115 Length=39610 Score = 149 bits (164), Expect = 1e-30 Identities = 271/389 (70%), Gaps = 12/389 (3%) Strand=Plus/Minus Query 253995 GGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATC 254054 ||| | || ||||| ||||| ||| | || ||||| || || || |||||||| |||||| Sbjct 19252 GGCCAGCTGCCTCACTTGCTGTTCTATGGACCTCCAGGCACCGGAAAGACGTCCACCATC 19193 Query 254055 CTGGCGCTGGCCCG--AACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGA 254110 ||||| ||| || ||| || |||| | || || || | || | | || Sbjct 19192 GTGGCGGTGGGACGCCAACTCT-TTGGTCCGGACTTCCGCAAGAACGGACGATTCTTGGA 19134 Query 254111 GCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC 254170 || ||||| |||||||| || || | | || || ||||| ||| |||||| ||| | Sbjct 19133 ACTAAACGCGTCTGACGATCGAGGCATCAAAGTGGTGCGCGAGAAGGTCAAGAGCTTCGC 19074 Query 254171 CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230 | || | || || | | | | | ||| || || |||||| || | | ||||| Sbjct 19073 CCAG--GGCGCCATCAGCAGTGCCAGTGGCCTG-CCACCCTTCAAGATCATCGTGCTGGA 19017 Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290 ||||| ||| ||||||||| |||||||||||| || || || || | |||||| | | Sbjct 19016 TGAGGCCGACTCCATGACGGGCGACGCGCAGTCGGCGCTGCGTCGCATGATGGAAAACTA 18957 Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCG 254348 |||| || |||||||| ||||| | ||||||||||| |||| ||||| | ||| Sbjct 18956 CTCCAAGGTCACGCGTTTCTGCCTCATTTGCAACTACGTGAGTCG--CATCATTGAGCCG 18899 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 |||| || ||||| |||||||| || || Sbjct 18898 GTGGCCTCGCGGTGTGCCAAGTTCCGCTT 18870 >seq141 Length=36708 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 14914 ACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 14973 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || |||||||||||||| ||||| ||||| | |||||| | |||| |||||| Sbjct 14974 GAGATCATGTCCATCCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGC 15033 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 || ||| ||| ||||| |||| ||||||| |||| | | | | || Sbjct 15034 GAGTAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATG 15093 Query 157424 CCGATGAGCGCGACGGGAAGCG 157445 ||||||||| |||| || |||| Sbjct 15094 CCGATGAGCTCGACAGGGAGCG 15115 >seq1085 Length=18951 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 115414 CTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTG 115473 ||||| || ||||| || || |||||||| ||||||||| | | ||||||||||||| Sbjct 13371 CTCTGGATGGGTTCAATAATCTTGGTGGAATTGTTGCAGGCCAGCGCGAACCGCGTCGTG 13430 Query 115474 CTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCT 115533 |||| | | ||||| | ||||| |||||||| ||| | | ||||| ||||| Sbjct 13431 GCCGAGAAGATCTCCATCGTGCGTCGTAGCGCCTGCTGAGCCGCCGCCGTCATGGAGTCC 13490 Query 115534 GCCTCGTCGAGAACGACAATCTT 115556 || ||||| || | || ||||| Sbjct 13491 GCTTCGTCCAGGATCACGATCTT 13513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073715648095552