Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq412 158 2e-33 seq666 102 2e-16 >seq412 Length=22564 Score = 158 bits (174), Expect = 2e-33 Identities = 432/648 (67%), Gaps = 14/648 (2%) Strand=Plus/Plus Query 35138 GGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATG 35197 |||| |||| || || | ||||||||||| || || || | |||||| | || ||| Sbjct 19495 GGAGCGAAGCGTGAAGACCGCACTGGAACAGGGACACTGTCGGTGTTTGGAGCGCAGATG 19554 Query 35198 AGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGA 35257 |||||| ||| | || ||| | ||| | || || ||||||| | | |||||| | Sbjct 19555 AGGTTCAGTCTGAGGGATAACATGTTCCCACTGCTGACGACCAAGAGAGTGTTCTGGCGC 19614 Query 35258 GGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATAC-AGA-CGCCAAAGAATTGG 35315 || || | ||| || || |||||||||||| ||| | || || ||| | | | Sbjct 19615 GGTGTGGCGGAGGAGCTTCTGTGGTTCATCAGTGGCGACACCAGTGCGCACACGCTGCAG 19674 Query 35316 CCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAG 35375 | ||||| | || ||||||||| ||| ||||| ||||| || | |||||| ||| ||| Sbjct 19675 C--AGAAGGACATTCACATCTGGGACGGCAATGGATCGCGTGAGTATTTGGATAGTCGAG 19732 Query 35376 GGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATT 35435 || | | | ||| || || || | || || || || || ||||| ||||| |||| Sbjct 19733 GGCTGCAGGCACGAGAAGTTGGTGACCTTGGGCCGGTGTATGGGTTCCAGTGGCGCCATT 19792 Query 35436 TTGGTGCTGAATA-TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG 35494 ||||||| |||| || || | | ||||| |||| | ||| | |||||| || Sbjct 19793 TTGGTGCCAAATACACGGACATG-CATGCGGATTACACTGATCAAGGTGTAGATCAACTG 19851 Query 35495 GCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCA 35554 || | | | | | ||| || || ||| || | |||| | | |||| Sbjct 19852 GCTGAGGTGATTCACAAGCTGCGAACGAACCCAACCGACCGCCGGATCGTACTTTCGGCC 19911 Query 35555 TGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAATT 35613 ||||| ||| ||||| || ||||| || || || ||||||||| ||| ||| || Sbjct 19912 TGGAACCCTGCTGATCTCAACGAGATGGCGCTGCCGCCCTGCCACATGTTCTG-TCAGTT 19970 Query 35614 TTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGG 35671 ||| || ||| ||||||| | ||||| ||| |||| ||||| || || ||| || Sbjct 19971 TTACGTTGCTGATGGAGAGCTATCGTGTCAGATGTACCAGCGCTCTGCTGACATG--GGA 20028 Query 35672 TTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTAT 35730 | || ||||| ||||| ||||| ||| | || || || || |||| ||| | Sbjct 20029 CTTGGTGTGCCATTCAACATTGCCAGCTACGCGCTGCTCACGAGATTGGTGGCGCAG-GT 20087 Query 35731 GGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACA 35778 || || || ||||| || ||||| || | | |||| |||||||| Sbjct 20088 GGCTGGACTGAAACCTGGCGAGTTCATTCATGTTATTGGCGACGCACA 20135 >seq666 Length=16246 Score = 102 bits (112), Expect = 2e-16 Identities = 184/264 (70%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 94783 ATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATA 94842 ||||| | ||||||||| |||||||||| || || ||| || || || ||||| Sbjct 15175 ATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCGTAAATG 15234 Query 94843 CCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGAC 94901 |||||||| || || || | |||| | |||||||||||| | |||||| ||| | Sbjct 15235 CCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGACGTGGC 15294 Query 94902 TGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATC 94961 || ||| || || || ||||| | || || || || | | | |||||||| || Sbjct 15295 -GTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTCTGGGACATGAGCTC 15353 Query 94962 ATATGTTTCAATGACAGATTTGATGTCTGATC-CGTGAATGCCGACAGCCACACGCATAA 95020 || || || | | | | |||||||| | || ||| ||||| | ||||| ||||| | Sbjct 15354 GTACGTCTCCAAGGCCGCCTTGATGTC-GCTCTTGTGGATGCCTAGCGCCACGCGCATGA 15412 Query 95021 TCATGTCCTGAGGGCGCTCAACCA 95044 |||| | ||| || ||||| |||| Sbjct 15413 TCATCTGCTGCGGCCGCTCCACCA 15436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989537227002995