Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq141 158 2e-33 >seq141 Length=36708 Score = 158 bits (174), Expect = 2e-33 Identities = 391/588 (66%), Gaps = 13/588 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||| | || ||||| || ||||| |||||||| | || || | ||||| || | Sbjct 15206 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 15265 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | | || || ||||| || |||||||| || ||||| || ||||| ||| || || | Sbjct 15266 AGCTTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 15325 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGGC 33748 | |||||||| || || |||||||||||||| | || | || || || || Sbjct 15326 AGAAGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACACGC 15385 Query 33749 GCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 || | || | | |||||| | ||||| | ||| ||||| | ||||| || || || | Sbjct 15386 GCGGGTC--GCA-CCACTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCT 15442 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | |||||| | || | | |||| || | | || || | || || || || | | Sbjct 15443 CAATGGCACGCAGCAGGTGGGTTTTCTCGACAATGTCCTTGATGTACGTGTCAATAAGCA 15502 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | |||| ||||| || ||||| || ||||| ||||| || |||||||| || | || Sbjct 15503 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAG 15562 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCC 33985 |||| | | ||||| || | | || |||| || || || || || ||||| || Sbjct 15563 CCTCAGGCACTTGCACCTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTGACTATACC 15620 Query 33986 ATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 34045 ||||||||| ||||| || |||| || || || || || | |||| || || Sbjct 15621 ATCACTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAG 15680 Query 34046 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 || ||| || |||| || | | ||||| || || | ||||| || || || Sbjct 15681 GTTCACCCAGTCCTTGAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAAGC 15740 Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 ||| ||||| || ||||| | ||| | ||| || | || || ||||| Sbjct 15741 CTCGGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAA 15788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629788557535920