Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq412 141 8e-29 >seq412 Length=22564 Score = 141 bits (156), Expect = 8e-29 Identities = 394/599 (66%), Gaps = 24/599 (4%) Strand=Plus/Minus Query 20923 GCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTC 20982 |||| || || |||||||| || || || ||||| || | || | || || | Sbjct 20164 GCAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACTCGC 20105 Query 20983 CCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGT 21042 | || |||| || | || || || | || ||| || || ||||||||||| |||| Sbjct 20104 CAGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAATGT 20045 Query 21043 TAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCC 21102 | || || || || || |||||||| || || | |||||||| ||| || || ||||| | Sbjct 20044 TGAATGGCACACCAAGTCCCATGTCAGCAGAGCGCTGGTACATCTGACACGATAGCTCTC 19985 Query 21103 CCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGT 21162 | ||| |||||||||||||| || | ||| || || || || |||||| ||| | Sbjct 19984 CATCAGCAACGTAAAACTGACAGAACATGTGGCAGGGCGGCAGCGCCATCTCGTTGAGAT 19925 Query 21163 CCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCG--TGGG-------GCCGCCTGT 21213 | || |||||||| || | | ||||| || || ||| |||| || || ||| Sbjct 19924 CAGCAGGGTTCCAGGCCGAAAGTACGATCCGGCGGTCGGTTGGGTTCGTTCGCAGCTTGT 19865 Query 21214 TAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGG 21273 ||| ||| | | ||| || || || || ||| | ||| | || | Sbjct 19864 GAAT---------CACCTCAGCCAGTTGATCTACACCTTGATCAGTGTAATCCGCATGCA 19814 Query 21274 CCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC 21333 || |||| | || |||||||| | |||||||||||| ||||||||||| || || | Sbjct 19813 TGTCCGTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCAC 19754 Query 21334 CCTCGCGGCGGTCCCCGAAGCCCTGCGCC--GCCAAAAAGGCGCGGGACCCGTGCGCGTC 21391 | | | || || | |||||| || | ||||| | | || || || | |||| Sbjct 19753 CAACTTCTC-GTGCCTGCAGCCCT-CGACTATCCAAATACTCACGCGATCCATTGCCGTC 19696 Query 21392 CCAAATTTTTACGCCGCGGCGCGACAG-TTCGGTGGAGTCGGTGGAGCCCCTGATAAACC 21450 ||| || | | | | || ||| | | | | | |||| ||| ||||| |||| Sbjct 19695 CCAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCACT-GGTGTCGCCACTGATGAACC 19637 Query 21451 ACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAAC 21509 |||| | ||||||| | || || | ||| ||||| || ||||| || | ||| || ||| Sbjct 19636 ACAGAAGCTCCTCCGCCACACCGCGCCAGAACACTCTCTTGGTCGTCAGCAGTGGGAAC 19578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427756767324720