Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq141 190 3e-43 seq666 156 6e-33 seq187 113 7e-20 seq412 96.9 5e-15 seq194 89.7 8e-13 >seq141 Length=36708 Score = 190 bits (210), Expect = 3e-43 Identities = 612/917 (67%), Gaps = 52/917 (6%) Strand=Plus/Minus Query 124995 CTGTTTCCCAT-CAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 || || ||||| |||| | || ||| | ||| | |||||||| ||||| |||| ||||| Sbjct 15791 CTCTTCCCCATTCAGG-AGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCTTCCTT 15733 Query 125054 TTGGACGGTCGAAGAGGTCGATCT-GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 ||||||| ||| ||| | ||||| || || | |||| | || |||| || | | | Sbjct 15732 CTGGACGGCCGAGGAGCTGGATCTCGTGCACG-ACCTCAAGGACTGGGTGAACC---TCA 15677 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || | ||||| | || || |||| | ||||||||||||| | | ||||| | Sbjct 15676 CGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCCTTCTTTGCTGCCAGTGATGGTA 15617 Query 125173 TCGTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTC 125230 | |||||||| || || | || || || ||| ||| || | || |||| || Sbjct 15616 TAGTCAACGAGAACTTG--GCCATGAACTTCAGCAACGAGGTGCAAGTGCCTGAGGC-TC 15560 Query 125231 G-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | ||||| ||||| ||||| ||| || |||||| | |||||||| ||||||| | Sbjct 15559 GCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGC 15500 Query 125290 TGATTGACATGTACATTCGCGA--TCCGCAACGTAAACACA--TGCTCTTTAACGCAATC 125345 | ||||||| |||||| || | | | | |||| || |||| | || || Sbjct 15499 TTATTGACACGTACATCAAGGACATTGTCGA-GAAAACCCACCTGCTGCGT---GCCATT 15444 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || || | |||| | | | || || || | |||| | | |||| ||| | Sbjct 15443 GAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCCGCGC 15384 Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 ||| || ||| | || | ||| |||| || || || || ||||| |||||||| ||| Sbjct 15383 GTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTTCTTCTCG 15324 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | || ||| ||||||| |||||||||||||| || |||||||| || || | Sbjct 15323 GGCTCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAAGCTT 15265 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 | |||||| | || || ||||||||| | ||| ||||| ||| || ||| Sbjct 15264 CTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTCATGTA 15205 Query 125585 TCGCAACTATCTGCGTCC-CGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATT 125639 ||| ||| ||| | || ||| ||| || ||| || | | | || Sbjct 15204 CTCCAAG---CTG-GTCAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATC 15159 Query 125640 GTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCAT 125698 || || || ||| ||| || || ||||| | ||| || || || ||| ||| | Sbjct 15158 GTGCGTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCCTGTCGAGC-T 15100 Query 125699 GATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 || |||||||||| ||| |||||| ||||||| ||||| ||||| || ||||| || Sbjct 15099 CATCGGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 15040 Query 125759 GTACGAGTTG--ATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 ||| | || | || || ||||| ||||||| |||||| || || || | ||| | Sbjct 15039 CTACTCGCTGGGAGTGTCC--AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGAC 14982 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAAC 125874 | || || || |||| ||||||||||| ||||||||| || ||||||| | || Sbjct 14981 ATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTACTCCAAG 14922 Query 125875 GCTACGGTGTCGGTGTC 125891 ||| |||||||| ||| Sbjct 14921 GCT--GGTGTCGGCGTC 14907 >seq666 Length=16246 Score = 156 bits (172), Expect = 6e-33 Identities = 352/517 (68%), Gaps = 18/517 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCG-CTATAGCCGTCTACTTGGAACCTTGGCACGCGGA 96934 |||||||| |||||| | ||| | || | || | ||| |||| ||||||||||| || Sbjct 15062 CAGGGCGGAGGTAAACG-CAAGGGGTCTTTCGCTATTTACCTGGAGCCTTGGCACGCAGA 15004 Query 96935 CGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAG--GCA-CGAGCCAG 96991 || ||||| || | || ||||||| ||| || | | ||| ||| || || | Sbjct 15003 TGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGG---TAACGAGTTGCATCGGGCGCG 14947 Query 96992 GGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGG 97051 |||||||| || || || ||||| || ||| ||||||||||||| || | | | ||| Sbjct 14946 CGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCCAATGG 14887 Query 97052 CTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGA 97111 | | ||||| | | |||||| | | || || || | ||| |||||||| || || Sbjct 14886 CAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTACGAGTGCTGGGGTGACGA 14827 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATG 97170 ||||||| | ||| | |||||| | ||||| || || |||||| || ||| Sbjct 14826 GTTTGAGACGCTCTACGAGAAGTACGAGAAGGAGGGACGTGCTCGCAAGACGA-TCAATG 14768 Query 97171 CACGAGAACTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 ||| |||||||| ||||| | |||| || ||| | ||||| || ||| | ||| Sbjct 14767 CACAGCAACTGTGGTTTGCCATCCTTGAC-GCGCAGATTGAGACGGGTGTTCCATTCATG 14709 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 || |||||||| | | || ||||| ||||| | |||||||||| ||| || Sbjct 14708 CTGTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAAAACTTGGGCACGATC---CGC 14652 Query 97290 TC---CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 || ||| ||||| ||| | | |||||| | ||||| || ||| ||| || ||| Sbjct 14651 TCCAGCAACTTGTGCTGTGAAGTGATGGAGTACACTTCTCCTGATGAGGTGGCTGTGTGC 14592 Query 97347 GTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAGG 97383 | |||| ||||| ||||| | |||||| |||| Sbjct 14591 AATTTGGCGTCGGTGGCACTGCCGATGTTTGTGGAGG 14555 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || | || || | |||||| | || Sbjct 13886 TACAAGACGGTGTGGGAGATCAAGCAGAAGTCAGTGCTGGACCTGTCGGCCGACCGTGGC 13827 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | ||||||| ||||||||| ||| |||| | || | ||||| || ||| ||| Sbjct 13826 GCCTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCATCAGCAAG 13767 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || || || ||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct 13766 CTCACGTCCATGCACTTCTACGCCTGGAAGAAGGGACTCAAGACGGGCATGTACTA 13711 >seq187 Length=32902 Score = 113 bits (124), Expect = 7e-20 Identities = 184/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||||||||| |||| ||||||||| |||||| || || ||||| || | ||||||| Sbjct 26445 GAATCCGTGGGTCAAGTGGCCTCCACTGGGCAGGTCCAGGCCCATAATGCGGTCGTGCGG 26504 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | | ||||||||||| |||||||| ||||||||||||||| || || Sbjct 26505 GCGCAGCAGTGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCCGAGTACGGCTGCACGTT 26564 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||||| || | | || |||| |||||||| || | Sbjct 26565 GACGCCCCACTTGTCCTCGTCCAGGCCGTAGGCCGTGAGCGCGCGCTGCTGGCACAGGAT 26624 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 26625 CTCGATCTTGTCGATCACCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTCG 26682 Query 127681 GAGTACTTGTTGATGAGACACGA 127703 | |||||||||| |||| ||||| Sbjct 26683 GCGTACTTGTTGGTGAGGCACGA 26705 >seq412 Length=22564 Score = 96.9 bits (106), Expect = 5e-15 Identities = 277/418 (66%), Gaps = 6/418 (1%) Strand=Plus/Plus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 || ||| || || || ||||| ||||| || ||||||||| | || | || |||| | Sbjct 19745 GAGAAGTTGGTGACCTTGGGCCGGTGTATGGGTTCCAGTGGCGCCATTTTGGTGCCAAAT 19804 Query 70119 ATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCAT 70176 | ||| ||| | | || || | | ||| ||||| |||||| || | || | || Sbjct 19805 ACACGGACATGCATG-CGGATTACACTGATCAAGGTGTAGATCAACTGGCTGAGG-TGAT 19862 Query 70177 TGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGC 70236 | ||| || || || ||||| || | |||||||| | | | ||||| ||||| Sbjct 19863 TCACAAGCTGCGAACGAACCCAACCGACCGCCGGATCGTACTTTCGGCCTGGAACCCTGC 19922 Query 70237 AGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACG 70295 ||| | || | ||||| || || || || ||| |||| | |||||||||| | Sbjct 19923 TGATCTCAACGAGATGGCGCTGCCGCCCTGCCACATGTTCTG-TCAGTTTTACGTTGCTG 19981 Query 70296 ATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCT 70355 |||| | | || || ||||| ||| | ||| |||||||| || ||||| || | Sbjct 19982 ATGGAGAGCTATCGTGTCAGATGTACCAGCGCTCTGCTGACATGGGACTTGGTGTGCCAT 20041 Query 70356 TTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAG 70415 | |||||||| ||||| | || | ||| || | || || | | || |||||| Sbjct 20042 TCAACATTGCCAGCTACGCGCTGCTCACGAGATTGGTGGCGCAGGTGGCTGGACTGAAAC 20101 Query 70416 CGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | ||||||| | || ||||||||||| || |||||| | || ||| | || || Sbjct 20102 CTGGCGAGTTCATTCATGTTATTGGCGACGCACATGTGTATCTGAACCACGTGGAACC 20159 >seq194 Length=48679 Score = 89.7 bits (98), Expect = 8e-13 Identities = 274/418 (66%), Gaps = 22/418 (5%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||||| ||||| | | | ||||| || | || | ||||||||| ||||||||| Sbjct 20867 TTGCGGTAGAAGATCATGGCTCCACGAGGTCCACGCAGCGACTTGTGCGTCGTAGTGGTC 20808 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCA---ATCAAGCCCGCA 127218 || | || ||||| || || ||||| ||| ||||||| | |||||| | Sbjct 20807 ACCACATCGGCGTACTCGAACGGCGAAGGAACGAC---GCCCGCAGCCACCAAGCCGCTA 20751 Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAG-CCGGCTGCATCGGCAATCTCTCGGAATCG 127277 ||||| || |||||||| | ||||| || | || |||| || ||||| || | || Sbjct 20750 ATGTGCGCCATATCGGCAAGCAGCACGGCGTCCTGCTG-GTCACAGATCTCGCGCATGCG 20692 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 ||||| | | | |||| || ||| |||||||| | || || |||| ||| Sbjct 20691 CGCGTAGTCAATGTGACGAGAGTAAGCACTCGTGCCGGCCACAATGAGTTTAGGACGGAA 20632 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGT-CTGAGGATCCACCT 127396 | || ||| | ||| | | ||||| | |||||| || || | |||| Sbjct 20631 CAACGCCGCTGTCTTCTCCAGTCCGTCGTAGTCAATGAGTCCCGTGCTCTCG-TCCAGAC 20573 Query 127397 TGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGA---CACGTTGC---------GGA 127444 ||| |||||||| ||||| |||| || || || || | |||| || Sbjct 20572 GGTAGGGCATGCTCTCGAAGAAGATGGACGTGGCCGAGATCTTCTTGCGGCCGAGCTGGT 20513 Query 127445 ATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 | ||||||| ||||||||| |||| |||||| || || |||| || | ||||||| Sbjct 20512 AGCCGTGCGACAGGTGGCCGCCGTGGGGCAGGTCCAGCGCCATAATGCGGTCGTGCGG 20455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025027907640