Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq412 140 2e-28 >seq412 Length=22564 Score = 140 bits (154), Expect = 2e-28 Identities = 367/553 (66%), Gaps = 13/553 (2%) Strand=Plus/Minus Query 25420 TCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACT 25479 ||| ||||||||| ||||| | ||| || || || ||||| || | | || | |||| Sbjct 20167 TCTGCAGCGGTTCCACGTGGTTCAGATACACATGTGCGTCGCCAATAACATGAATGAACT 20108 Query 25480 CTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGA 25539 | || |||| || || | || | |||| || |||||| || ||||||||| | Sbjct 20107 CGCCAGGTTTCAGTCCAGCCACCTGCGCCACCAATCTCGTGAGCAGCGCGTAGCTGGCAA 20048 Query 25540 TGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 25599 |||| || || || || | |||||||| | || | |||||| | ||||||||| ||| Sbjct 20047 TGTTGAATGGCACACCAAGTCCCATGTCAGCA-GAGCGCTGGTACATCTGACACGATAGC 19989 Query 25600 TCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCC 25659 ||| | || |||||||||||||| | ||| ||| || || || || || | Sbjct 19988 TCTCCATCAGCAACGTAAAACTGACAGAACATGTGGCAGGGCGGCAGCGCCATCTCGTTG 19929 Query 25660 AAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT-GTCC----C 25714 | || |||||||||||| | | | ||| | | ||| |||||| || | | Sbjct 19928 AGATCAGCAGGGTTCCAGGCCGAAAGTACGATCCGGCGGTCGGTTGGGTTCGTTCGCAGC 19869 Query 25715 TGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCA 25774 | | | ||| | | ||| ||||| || || | | ||| || || || Sbjct 19868 TTGTGA-ATCACC----TCAGCCAGTTGATCTACACCTTGATCAGTGTAATCCGCATGCA 19814 Query 25775 TGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTC 25834 |||||||||| | || || |||| | |||||||||||| |||||||| || ||||| | Sbjct 19813 TGTCCGTGTATTTGGCACCAAAATGGCGCCACTGGAACCCATACACCGGCCCAAGGTCAC 19754 Query 25835 CATCTTCCCTGTGCTCAAAGCCC-CTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCC 25893 || |||| | |||| ||||| | |||||||| | || | || |||||| ||||| Sbjct 19753 CAACTTCTC-GTGCCTGCAGCCCTCGACTATCCAAATACTCACGCGATCCATTGCCGTCC 19695 Query 25894 CAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCAC 25953 ||||| | | |||||| ||| | | | ||| || |||| ||||||| Sbjct 19694 CAGATGTGAATGTCCTTCTGCTGCAGCGTGTGCGCACTGGTGTCGCCACTGATGAACCAC 19635 Query 25954 AGCAGCTCCGCCG 25966 || |||||| ||| Sbjct 19634 AGAAGCTCCTCCG 19622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340122307519797