Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq666 297 5e-75 >seq666 Length=16246 Score = 297 bits (328), Expect = 5e-75 Identities = 880/1348 (65%), Gaps = 13/1348 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||||||||| || | | ||| ||||| || | ||| || |||| || Sbjct 15332 TTCACGCACGCCACGCCCACGCTCTTCAACGCTGGCACGCCACGTCCCCAATTGTCCTCG 15273 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | || ||| ||||||| || || ||||| || | |||||||| ||| | Sbjct 15272 TGCTTCTTGCTGGCTATGCAGGACGACTCGATTGAGGGCATTTACGACACACTGAAGCAG 15213 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| || |||||| || || |||||||| | || ||||| | ||||| Sbjct 15212 TGTGCCTGCATCTCCAAGTGGGCTGGAGGAATTGGCATTAGTATGCACAACATCCGTGCC 15153 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||||| ||||| || ||||| || | || ||||| | | |||||| | || Sbjct 15152 ACCAACAGCTACATCCGAGGCACCAACGGCTCGTCCAATGGCATCATCCCCATGTTGCGG 15093 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||||| || ||||||| | ||||| |||||||| ||||| || ||||| ||| | || Sbjct 15092 GTGTTTAACGATACTGCTCGCTACGTGGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTC 15033 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 ||||| || || |||||| || || ||| | |||||||| | || | || || ||| Sbjct 15032 GCTATTTACCTGGAGCCTTGGCACGCAGATGTGTTTGAGTTCTTGGACTTGCGCAAGAAC 14973 Query 363907 ACGGGAAAAGAG--GAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || ||| | || || || || || ||||||| || |||||||| | || | Sbjct 14972 CACGGTAACGAGTTGCAT--CGGGCGCGCGACTTGTTCTACGCCCTTTGGGTCCCCGATC 14915 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 || |||||||| ||||| || | || ||| | || ||||| | ||| || Sbjct 14914 TGTTCATGAAGCGTGTGGAAGCCAATGGCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTC 14855 Query 364025 CAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGG 364084 | || || | ||| ||||||||||| | || | || ||||| ||||| || || Sbjct 14854 CTGGACTCTACGAGTGCTGGGGTGACGAGTTTGAGACGCTCTACGAGAAGTACGAGAAGG 14795 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 ||||| ||||| ||||| || |||||| | || |||||||||||| | || ||| Sbjct 14794 AGGGACGTGCTCGCAAGACGATCAATGCACAGCAACTGTGGTTTGCCATCCTTGACGCGC 14735 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 |||||||||| || || | ||| ||||||| || | ||||||||||| |||| Sbjct 14734 AGATTGAGACGGGTGTTCCATTCATGCTGTACAAGGACGCAGCTAACCGCAAGTCGAACC 14675 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 |||| || | || || || | |||||| | || || | || || ||||| Sbjct 14674 AGCAAAACTTGGGCACGATCCGCTCCAGCAACTTGTGCTGTGAAGTGATGGAGTACACTT 14615 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAG 364324 |||| || ||| || || || || | |||||| | || || ||| |||||| | | Sbjct 14614 CTCCTGATGAGGTGGCTGTGTGCAATTTGGCGTCGGTGGCACTGCCGATGTTTGTGGAGG 14555 Query 364325 ATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCG 364384 | ||| || || || | | ||||| |||||| | | || |||| || Sbjct 14554 ACGGTGTGTTCAACTACAAAAGGTTGTATGAAGTAACCAAGGTGGTGACGCGCAACCTGA 14495 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| |||||| || || || || || | || || || || || ||||| Sbjct 14494 ACAAGGTGATCGACGTCAACTACTA-CCCGGTCGTAGAGGCGCGCAAGTCGAACATGCGC 14436 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 || || || | ||| ||||||| || || || ||||| | || || | | || Sbjct 14435 CACCGTCCCGTGGGTATTGGTGTTCAAGGTCTGGCTGATGCGTTCATCCTTATGAACTAC 14376 Query 364504 GCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 || ||||| || | | || |||| | || ||| | ||||| || || || || | Sbjct 14375 GCGTTTGA-GAGCGAGCAGGCACGTGAGTTGAACAAGAACATCTTCGAGACGATCTACTA 14317 Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 || | ||| | ||| || | || || ||| ||| |||| | Sbjct 14316 CGCTTCTATGGAGACGTCGATGGAGATTGCCAAGGAGTTGGGCCCCTACGAGACTTTCCA 14257 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGT 364682 ||| || || |||| |||||||| || | ||| |||||| || || || Sbjct 14256 GGGCTCGCCGGCCAGCAAGGGTGTTTTCCAGTTCGACATGTGGGGTGTCACTCCTTC-GT 14198 Query 364683 CCG----ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACT 364738 ||| ||| | |||| | |||| || || | ||||| ||| |||||||| Sbjct 14197 CCGGACTTTGGGATTGGGCTGCGCTGAAGGAGAATGTGATCAAGCACGGTCTTCGCAACT 14138 Query 364739 CCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGT 364798 | || | || |||||||| |||||||||||||| |||||| | || |||||||||| Sbjct 14137 CGCTGCTGGTGGCCCCCATGCCGACGGCTTCTACTGCTCAGATCTTGGGCAACAACGAGT 14078 Query 364799 GCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGG 364858 |||| || | || ||| | || || || || ||| | || || || || Sbjct 14077 CTATCGAGCCCTACACGTCCAACATGTACAACCGTCGTGTGCTTGCTGGCGAGTTCACGA 14018 Query 364859 TAGTTAATAAGTACCTAGTCAAGGATCT 364886 | ||||| |||||||| | ||||| || Sbjct 14017 TCGTTAACAAGTACCTGATGAAGGAGCT 13990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303291996584798