Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq141 138 1e-27 >seq141 Length=36708 Score = 138 bits (152), Expect = 1e-27 Identities = 389/589 (66%), Gaps = 15/589 (3%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||| | || ||||| || ||| | |||||||| | || || | ||||| || | Sbjct 15206 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 15265 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | | || || ||||| || |||||||| || ||||| || ||||| ||| || || || Sbjct 15266 AGCTTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGGAGCCC 15324 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-----ACCGG 32826 || ||||| || || || ||||| |||||||| | || | || || || | Sbjct 15325 GAGAAGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACACG 15384 Query 32827 CGCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 ||| | || | | |||||| | ||||| | ||| ||||| | ||||| || || ||| Sbjct 15385 CGCGGGTC--GCA-CCACTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTC 15441 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || ||| | || | | |||| || | | || || | || || ||||| | Sbjct 15442 TCAATGGCACGCAGCAGGTGGGTTTTCTCGACAATGTCCTTGATGTACGTGTCAATAAGC 15501 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 || |||| ||||| || ||||| || ||||| || || || ||||||||||| | | Sbjct 15502 AGCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGA 15561 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTC 33063 ||||| | | || || || | | || |||| || || || || || ||||| | Sbjct 15562 GCCTCAGGCACTTGCACCTCGTTGCTGAA--GTTCATGGCCAAGTTCTCGTTGACTATAC 15619 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA 33123 | |||||||| ||||| || |||| || || || || || | |||| || | Sbjct 15620 CATCACTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGA 15679 Query 33124 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 | || ||| || |||| || | | ||||| || || | ||||| || || | Sbjct 15680 GGTTCACCCAGTCCTTGAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAAG 15739 Query 33184 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 33232 |||| ||||| || ||||| | ||| | ||| || | ||||| || || Sbjct 15740 CCTCGGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAA 15788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633602781644400