Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq141 102 9e-17 >seq141 Length=36708 Score = 102 bits (112), Expect = 9e-17 Identities = 407/635 (64%), Gaps = 22/635 (3%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 |||||| | ||| || ||||| || || | || ||||| || || | ||| || Sbjct 15204 GTACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGA 15263 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 ||| ||| ||| || | || || || ||||||||||| || || || ||| || | | Sbjct 15264 GAAGCTTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGGAGC 15322 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGG-------CAAAA 93253 | || || || ||||| ||||| || ||||| |||| | ||||| | | | | Sbjct 15323 CCGAGAAGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACA 15382 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 |||| | | ||| || | ||||| | |||||| |||| | ||| || Sbjct 15383 CGCGCGG-------GTCGCACCACTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGG 15435 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT--ATGTATGTAT 93371 | || || || || | |||| | |||| | ||| || | ||||| || | Sbjct 15436 ATAGTCTCAATGGCACGCAGCAGGTGGGTTTTCTCGAC--AATGTCCTTGATGTACGTGT 15493 Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431 | || | ||| || |||| || || |||| ||||| || || || ||||| ||||||| Sbjct 15494 CAATAAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGA 15553 Query 93432 AACATCTAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTG 93490 | || | ||| || | | ||||| || ||| || | | | || || || ||| Sbjct 15554 AGCAGCGAGCCTCAGGCACTTGCACCTCGTTGCTGAAGTTCATGGCCAAG-TTCTCGTTG 15612 Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 ||||||||||| || ||||| || |||| | ||||| || || || ||| | Sbjct 15613 ACTATACCATCACTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTG 15672 Query 93551 TCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAA 93610 || | || || |||| || || || | ||||| | || ||| | ||||| Sbjct 15673 TCCGTGAGGTTCACCCAGTCCTTGAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAG 15732 Query 93611 AACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 || || || || || || |||||||| | ||| | ||| || | ||||| || || | Sbjct 15733 AAGGAAGCCTCGGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGC 15792 Query 93671 ACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || || || ||||| || || |||||||| Sbjct 15793 ACGAAGCGGTTGGGGTTCTCCACGAGGAACGGCTC 15827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556835121756360