Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq674 168 1e-36 seq141 158 2e-33 seq511 102 2e-16 seq2426 84.2 4e-11 >seq674 Length=22689 Score = 168 bits (186), Expect = 1e-36 Identities = 444/663 (67%), Gaps = 26/663 (4%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || ||||||||||||||||| || | || | || ||||| || | | ||||| Sbjct 14469 CTTTCCGGTGGTTGGAAGATGAAACTCGAGCTGGCCCGTGCCATGCTTCAGAAGGCCGAC 14528 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| |||||||||||||| || |||||| |||| || ||||| |||||||| | | Sbjct 14529 ATCCTGCTGCTTGATGAGCCGACGAACCACTTGGATGTCAAGAACGTCGCCTGGCTGGAG 14588 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||| | || ||||||| || || | ||| |||| || || |||||||| || ||| Sbjct 14589 AACTACTTGACGAGTCTGACCAACGTGACCTCCATCATGGTGTCGCACGACTCCGGTTTC 14648 Query 279885 CTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAG 279941 || || | || ||| | |||||| ||||| ||| | || || ||| ||| |||| Sbjct 14649 CTTGACACGGTCTGCACGAACATCATCCACTACGAGACCCGTAAGCTCAAGATCTACAAG 14708 Query 279942 CACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGAC 280001 |||||| |||| ||||||| || |||||||| |||||||| || Sbjct 14709 ------GGCAACTTGTCCAAGTTCGTGGAGCAGAAGCCTGAGGCTAAGGCCTACTACGAG 14762 Query 280002 CTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-AC 280060 ||| || | | || |||| ||||| ||||| || || || | | |||| | Sbjct 14763 CTGGAGTCGGAGAACGTGAAGTTCACGTTCCCGGAGCCCGGTTTCCTTGCTGACATCAAG 14822 Query 280061 ATCAAAGGATCGCGCAATCATGAAGCT-CCGTGGCGTCTCCTTTGCTTATCCCAATGGCC 280119 | ||| || || | ||||| || || || || | || || | || Sbjct 14823 AACAAGGGTAAGC-CCATCATTCGTCTGACGAACTGT-TCGTACCAGTACCCGGGTACCC 14880 Query 280120 CCAA--CATC-TTCAGCAGTGTCAACTCGCAGGT---TTCTAT-GAACTCACGGATTGGT 280172 |||| | || ||| || || | | | || ||| | || | || || | Sbjct 14881 CCAAGCCGTCGATCAACAACATCTCCGTG-ACGTGCGCTCTGTCGAGC---CGTATCGCC 14936 Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 || | ||||| || ||||| |||||||| || || ||||| | ||||| || ||| Sbjct 14937 GTGCTGGGACCTAACGGTGCTGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTT 14996 Query 280233 CAGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 || |||| ||| || | || |||||||| || |||||| | || ||||| ||||| Sbjct 14997 GAGCCCAC-GAGCGGCCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTACGTGGCTCA 15055 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 |||||||||||||||||| ||| ||||| ||| ||| | ||||| ||||| ||||| Sbjct 15056 GCACGCTTTCCACCACATTGAGTCGCACCTCGACGAGACGGCCAACCAGTACATCCAGTG 15115 Query 280352 GCG 280354 ||| Sbjct 15116 GCG 15118 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || ||||| |||| || |||||||| || || ||||| | |||| |||| ||| | Sbjct 14118 GACCTGTGCAACTGCGAGTTCTCGCTTGCCTACGGTGGTATGATTTTGCTGAACAACGCT 14177 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || || | |||||||||| |||| || ||||| ||||||||| || |||||| Sbjct 14178 CGTCTTCGCCTCAAGCGTGGACACCGTTACGGTCTGTGCGGTCCCAACGGTTGTGGTAAG 14237 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 || || ||||||||||| | ||||| ||||| || || || || Sbjct 14238 TCGACGCTCATGCGCGCCATCTCCAACGGCCAGCTTGAGGGCTTCCC 14284 >seq141 Length=36708 Score = 158 bits (174), Expect = 2e-33 Identities = 528/816 (65%), Gaps = 8/816 (1%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||| ||||||| ||||| || Sbjct 14947 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTG 15006 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| || || | || | ||||| ||||| ||||| | Sbjct 15007 ACGTTGTAGATCTTGGACACTCCCAGCGAGTAGAGCAGACGGTCAGCCACGAACTCAATG 15066 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || | ||||||||||| || | ||||| ||| | || | | Sbjct 15067 TACTGGCACATGAGCCCCGAGTTCATGCCGATGAGCTCGACAGGGAGC-GAGTCGCGCAC 15125 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| || | ||| | | || || || ||| || | | ||| | | | ||| Sbjct 15126 GAACTCGTGCTCGATCACCACAGCGTCACGCACGATCTCGTGCACGCGGCTCTCCGGCAG 15185 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| ||||||| ||||||| ||| | | || | ||||| |||||||| || Sbjct 15186 CTTGTTGACCAGCTTGGAGTACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACG 15245 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 ||||||| |||||| || | | || |||||||| | ||||| ||| |||||||||| Sbjct 15246 GCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAA 15305 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | ||| ||||| || ||||| | | |||||| || | | || | || || Sbjct 15306 GATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCG 15365 Query 251982 CTCAG---CAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 || | ||||| | | | | |||| | ||||| || ||||| Sbjct 15366 TTCCGGGTAGGACGACACGCGCGGGTCGCACCACTTGAGCGCCCAGTTGGCTTTCTTCTG 15425 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 || ||||| || || || ||| | || | | |||| || ||||| ||| Sbjct 15426 GACACACGGGATAGTCTCAATGGCACGCAGCAGGTGGGTTTTCTCGACAATGTCCTTGAT 15485 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | || |||| || || ||||||| |||||| |||||| ||| || |||||| | Sbjct 15486 GTACGTGTCAATAAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAA 15545 Query 252159 AGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGTT 252218 | ||||| || || ||| | || || || ||||| | || | ||| Sbjct 15546 GCCGTAGAAGCAGCGAGCCTCAGGCACTTGCACCTCGTTGCTGAAGTTCATGGCCAAGTT 15605 Query 252219 CTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGACG 252278 ||| | || || ||||| ||| | ||||||||| | || | | |||||||||||| || Sbjct 15606 CTCGTTGACTATACCATCACTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCG 15665 Query 252279 CTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTTCTTC 252338 ||| | ||| |||| | |||| |||||| | ||| || ||| | || || Sbjct 15666 CTCGTTGTCCGTGAGGT--TCAC-CCAGTCCTTGAGGTCGTGCACGAGATCCAGCTCCTC 15722 Query 252339 CACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 |||||||||| | | | | |||||||||||||| Sbjct 15723 GGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 15758 >seq511 Length=19559 Score = 102 bits (112), Expect = 2e-16 Identities = 239/358 (67%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 218654 TTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGC 218713 ||||||| || ||| | |||| || ||||| || |||| ||||| |||||||||| Sbjct 10670 TTAAGGTGGCGCAGCTGGCTGGCTACGTATCGGAGCACTCTGCGTACCACCACGGTGAGC 10729 Query 218714 AGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGA 218773 ||||| |||| || || || ||||| ||||| | || || || ||||| || Sbjct 10730 AGAGTTTGCAAGGCTGTATCGTGAATATGGCGCAGGATTTCGTTGGAAGCAACAATATCC 10789 Query 218774 ACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTT 218833 || | ||| |||| ||||||||| ||| | || | ||||||| |||||| || Sbjct 10790 ACCTCCTGTCTCCCATCGGTCAGTTCGGTACGCGGTTGATGGGTGGTAAGGATGCAGCCA 10849 Query 218834 CTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAAT---CAGG 218890 || | ||||| || || || ||| || | ||||| | | | | || | || Sbjct 10850 GCGCTCGTTATATTTTCACCAACTTGGAGCAGCTCACGCGTCGTATCTACGATCCCCTGG 10909 Query 218891 CCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGT 218950 | |||||| || |||||||| || || || || || |||||||| || |||| Sbjct 10910 ATAACGATGTG---CTGAAGTATCTGGATGAAGACGGACAGTCAATTGAGCCGGAATGGT 10966 Query 218951 ATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 | | || ||| ||| | |||| || || ||| |||||||||| || ||||| Sbjct 10967 ACATCCCGATTATCCCGATGGTGCTTGTCAACGGTAGTGATGGTATCGGAAC-GGGTT 11023 >seq2426 Length=2822 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 2138 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 2079 Query 142565 CCAC 142568 |||| Sbjct 2078 CCAC 2075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027788218972449