Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq141 376 5e-99 seq666 215 1e-50 >seq141 Length=36708 Score = 376 bits (416), Expect = 5e-99 Identities = 597/844 (71%), Gaps = 23/844 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| ||||||||| | || || | | ||| Sbjct 15758 ATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCCGAGGAGCTGGATCTCGTGCACGAC 15699 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 | ||||| | || | || ||||| ||| |||| || | |||||| Sbjct 15698 CTCAAGGACTGGGTGAACCTCACGGACAACGAGCGCCACTTCATCAAGCACGTGCTGGCC 15639 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 ||||| || ||| ||| || |||||||| |||||| |||||| | |||| || ||| Sbjct 15638 TTCTTTGCTGCCAGTGATGGTATAGTCAACGAGAACTTGGCCATGAACTTCAGCAACGAG 15579 Query 42489 GTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 ||||| || | | ||||| ||||||||||||||||||||||| ||||| |||||| | || Sbjct 15578 GTGCAAGTGCCT-GAGGCTCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 15520 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||| ||||||||| | ||||| | ||||||||||| ||| |||||| | Sbjct 15519 CTCGGAGGTGTACTCG---CTGCTTATTGACACGTACATCAAGGACATTGTCGAGAAAAC 15463 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | ||| | ||||| ||||| || || || || ||||||| || |||||||||| Sbjct 15462 CCACCTGCTGCGTGCCATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCT 15403 Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGC---GAGAGGCTGGTAGCCTTTACCG 42720 ||| ||| ||| |||| || ||| | | || ||||| | |||||| | | Sbjct 15402 CAAGTGGTGCGA----CCCGCGCGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTG 15347 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-G 42779 | || ||||| ||||||||||||||| ||||| ||||||||||||||||||| || | Sbjct 15346 CAGTGGAGGGTATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTG 15287 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || ||||| || || | |||||||||||| ||||||||| | |||||||| |||| Sbjct 15286 GTCTC-ATGCCTGGTCTAAGCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCAC 15228 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGG 42899 | |||||| ||||||||| ||| ||| | | ||| |||||| || || || Sbjct 15227 ACGGACTTCGCCTGCCTCATGTACTCCAAGCTGGTCA---ACAAGCTGCCGGAGAGCCGC 15171 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCT-CACGCAGTCGCT 42958 || | | ||| | || || |||| ||||||| | |||||| | | || | ||||| Sbjct 15170 GTGCACGAGATCGTGCGTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCG-ACTCGCT 15112 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 || || || ||||||||||| | ||||||||| ||||||| ||| ||| || Sbjct 15111 CCCTGTCGAGCTCATCGGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGC 15052 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 |||| ||| || | | | |||| | | |||||||| | ||| ||||| Sbjct 15051 TGACCGTCTGCTCTACTCGCTGGGAGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGA 14992 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 || ||||| | |||||| || |||||||||||||||| ||||||||||| || | ||| Sbjct 14991 CTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGA 14932 Query 43139 CTAC 43142 ||| Sbjct 14931 GTAC 14928 >seq666 Length=16246 Score = 215 bits (238), Expect = 1e-50 Identities = 1069/1682 (64%), Gaps = 74/1682 (4%) Strand=Plus/Plus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || |||||||||||| ||||||||||| | |||||||| || |||||||| ||| || Sbjct 13707 CATGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAG 13766 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | || | |||||| | | || |||||| ||||| ||||| Sbjct 13767 CTTGCTGATGGTC------GGGTCGGCGATGTG------GATGTTGAGCGACTGACTCTG 13814 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | | | ||| |||| || || || | || | | | |||||| ||||| Sbjct 13815 GCAAATGTAGG-CGCCACGGTCGGCCGACAGGTCCAGCACTGACTTCTGCTTGATCTCCC 13873 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAAC-CCTTCGATGTTCTGCACCGAG 244012 || |||||||||| | ||||| || || |||| ||||| | |||||||| || Sbjct 13874 ACACCGTCTTGTACTTCTCCTTGACGTTGTCCGGGATGGCCTTC-ACCTTCTGCACGGAA 13932 Query 244013 CCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAG 244071 || || | | | ||| |||| | | | |||| | |||||| || || || Sbjct 13933 CCACCGTCGTTCAGAATCTGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGATC-AG 13991 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 | ||| | ||||| | |||| || | | ||||| || | ||||| || || | ||| Sbjct 13992 CTCCTTCATCAGGTACTTGTTAACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTA 14051 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 | |||| || |||||||| ||| ||||||||| ||||| || || || Sbjct 14052 CATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGC 14111 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCT 244251 ||||||||||| | ||||||||| ||| | | |||||| | ||| | | ||| Sbjct 14112 CGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTT---GAT-CACATTCT 14167 Query 244252 G----AGCTCGTTCCAGTCCCACATGCCCGA-GAGGTCCTCGCGTTTGAGGCCCCACATG 244306 ||| | ||| ||||| | || || || | | ||| ||||||||| Sbjct 14168 CCTTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAG-------GAGTGACACCCCACATG 14220 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || ||||| | | ||||||||| | || ||||| | | ||| |||||| || Sbjct 14221 TCGAACTGGAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCAAC 14280 Query 244367 CGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 || ||| | || || | | || | | ||||||||||| ||||||||||| | Sbjct 14281 TCCTTGGCAATCTC-CATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 14339 Query 244426 CTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTC 244485 |||||||| || || |||| ||| || | | | ||| | ||||| | || Sbjct 14340 CTTGTTCAACTCACGTGCCTGCTCGCTCTCAAACGCGTAGTTCATAAGGATGAACGCATC 14399 Query 244486 GGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGC 244542 ||||| || || || || || || | ||| | ||| ||| |||| || |||| | Sbjct 14400 AGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCCTC 14459 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG 244602 | || || ||||| ||||| |||||||||||||||| |||||||| || | || Sbjct 14460 TACG---ACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTT 14516 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 | || || || | | ||| | || | | ||||| Sbjct 14517 GGTTACTTCATACAACCTTTTGTAGTTGAACACACCG---TCCTC--------------- 14558 Query 244663 CACAAAC-TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 ||||||| ||| || || || |||| ||||| || |||||||| || | | Sbjct 14559 CACAAACATCGGC-AGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAG 14617 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| | | || ||| | ||| ||| | ||| ||||||| || || || | Sbjct 14618 TGTACTCCATCACTTCACAGCACAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGT 14677 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 | |||||| ||| ||||||||||| |||||||| || | || ||||| | ||| | Sbjct 14678 TCGACTTGCGGTTAGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCG 14737 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 || | |||| | ||| || | | || |||| |||| ||||||| ||||| Sbjct 14738 CGTCAAGGATGGCAAACCACAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCT 14797 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGG 244960 |||||| ||| || | ||| |||||| |||||| ||||| || || || | Sbjct 14798 TCTCGTACTTCTCGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAG 14857 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 | | ||||| | | |||||||| ||| | | | || | || |||||| || Sbjct 14858 CTTCA-TTGGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGA 14916 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 ||||||| ||| ||||| | ||| | ||| | | || ||| || || |||| Sbjct 14917 TCGGGGACCCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTC 14976 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 || | || ||||| || ||||| || || ||||||| ||||||| ||| | ||||| Sbjct 14977 TTGCGCAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAA 15036 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGAT 245196 | || || || || |||||||||| | | ||||| |||| || | Sbjct 15037 GACCCCTTGCGTTTACCTCCGCCCTGGTCCA----CGTAGCGAGCAGTATCGTTAAACAC 15092 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTT 245256 |||| | || | ||||| || || |||||||||||| ||||||| | | Sbjct 15093 CCGCAACATGGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGT 15152 Query 245257 GCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCA 245316 | | | || |||| || ||||| | ||| || || |||||||||| ||| || Sbjct 15153 GGCACGGATGTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACA 15212 Query 245317 GCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCA 245376 ||| | ||||| |||||||| || ||| || ||| |||| ||||| Sbjct 15213 CTGCTTCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCA 15272 Query 245377 GGAGGACAGCTGGGG-CTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAA 245435 ||||||| ||||| | ||| | ||| | |||||| || ||||| ||||||| || | Sbjct 15273 CGAGGACAATTGGGGACGTGGCG-TGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGA 15331 Query 245436 AG 245437 || Sbjct 15332 AG 15333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944295654158640