Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq911 136 9e-27 seq1010 132 1e-25 seq414 131 4e-25 seq688 123 6e-23 seq125 87.8 4e-12 >seq911 Length=12855 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 12054 CATG-CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 11996 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||| ||||| || | Sbjct 11995 CGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAG 11936 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||| |||||| || ||||| || || || || || | Sbjct 11935 GGGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCT 11876 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 11875 CCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11824 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 12282 CATG-CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGT 12224 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || |||||||| ||||| || | || || || ||||||||||| ||||| || | Sbjct 12223 CGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAG 12164 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||| |||||| || ||||| || || || || || | Sbjct 12163 GGGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCT 12104 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || |||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 12103 CCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12052 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | ||| || || || | || || || ||||| || |||||| Sbjct 12507 TCCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCT 12448 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || ||||||||||| ||||| || | || Sbjct 12447 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 12388 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || ||||| |||||| || ||||| || || || || || || || Sbjct 12387 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 12328 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 12327 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12280 >seq1010 Length=11520 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || || || || | ||| || || ||||| || |||||| Sbjct 284 TCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 225 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 |||||||| ||||| || | || || || ||||||||||| ||||| || | || Sbjct 224 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 165 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || ||||| || ||| || ||||| || || || || || || || Sbjct 164 AATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 105 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 104 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57 >seq414 Length=22499 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | ||| || || ||||| || |||||| Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || ||||||||||| ||||| || | || Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || ||| || ||||| || || || || || || || Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 180 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 181 TCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq688 Length=17951 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | |||||||| ||||| || | || || || ||||||||| Sbjct 3732 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3673 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | ||||| ||||| || |||||||||||| || ||||| || Sbjct 3672 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 3613 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || ||| || || || || |||||||| ||||| || ||||| ||||| || || Sbjct 3612 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3553 Query 288466 ATCTGCATTAT 288476 |||||||| || Sbjct 3552 ATCTGCATGAT 3542 >seq125 Length=38444 Score = 87.8 bits (96), Expect = 4e-12 Identities = 187/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 ||||| || | ||| ||| |||||||||||| |||| | | ||| ||||| || Sbjct 13455 ATATAACGAGGACTAGCGGCATCCTTACCACCTTGCAGCCGTGTACCAAACTGACCGGAT 13514 Query 325382 GGCAACAACCAGT-TGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGT 325440 || || | |||| || || ||| || ||| | ||||| || | || || || || Sbjct 13515 GGATAC-AGCAGTGGGAGATTGTTGGAGCCCACAAAGTCCTGGGCCATATTAACAATCGT 13573 Query 325441 CCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC-GTAACCGCTGA 325499 | ||||| |||||||| || ||||| || || | || || || || |||||| | Sbjct 13574 CGAGTGCAGCGATGCTTCACCGTGGTGGTAAGCTGTGTGTTC-GCTACAGTAACCAGCCA 13632 Query 325500 ACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCC 325559 ||||| |||||||| ||| |||| | |||||||| || | | | | || || | Sbjct 13633 GTTGTGCCACCTTCACCTCGCTCGTTAGTTTGCGCTTCAAGCAAGCAAAAAGAACCTTAC 13692 Query 325560 GTTGAGAAGGTTTGAAACCATCAACGACCGACGG 325593 | || ||| ||| | ||| ||||| |||||||| Sbjct 13693 GCTGGGAAATTTTCAGACCGTCAACCACCGACGG 13726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179598643266142