Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq674 138 2e-27 seq141 120 7e-22 seq125 105 1e-17 >seq674 Length=22689 Score = 138 bits (152), Expect = 2e-27 Identities = 670/1056 (63%), Gaps = 51/1056 (5%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 15143 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 15084 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 15083 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 15024 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | |||| || | | ||||| |||| ||| || || || Sbjct 15023 CTTCCACACCTGGCCGCTCGTGGGCTCAACCTCACCCGTCAGCATCTTGATCAGCGTCGA 14964 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || || | ||| | || | | ||| || || || Sbjct 14963 CTTACCAGCACCGTTAGGTCCCAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCAC-- 14907 Query 333547 GGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGC 333606 || || ||||| | | || |||||||| |||| | || ||| | Sbjct 14906 GGAGAT----GTTGTTGATCGACGGCTTGGGGGTACCCGGGTACTGGTACGA-ACAGTTC 14852 Query 333607 GT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGG 333665 || || ||||||| |||| |||| | | ||||| |||||||| ||| Sbjct 14851 GTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCGGGCTCCGGG 14792 Query 333666 AACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGC 333722 ||| | || | | ||| || ||| || ||||||| | | || || | Sbjct 14791 AACGTGAACTTCACGTTCTCCGACTCC---AGCTCGTAGTAGGCCTTAGCCTCAGGCTTC 14735 Query 333723 TTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAA 333782 | || |||||||| ||||| || |||||||| |||| ||||| || | ||||| Sbjct 14734 TGCTCCACGAACTTGGACAAGTTGCCCTTGTAGATCTTGAGCTTACGGGTC---TCGTAG 14678 Query 333783 TGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCAC 333842 ||||| || ||||| || | ||| ||||| ||||||||||| ||||| || | | | Sbjct 14677 TGGATGATGTTCGTGCAGACCGTGTCAAGGAAACCGGAGTCGTGCGACACCATGATGGAG 14618 Query 333843 GAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGA 333902 | |||| | || | ||| ||| | |||||| ||||| ||| | Sbjct 14617 GTCACGTTGGTCAGACTCGTCAAGTAGTTCTCCAGCCAGGCGACGTTCTTGACATCCAAG 14558 Query 333903 TGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGA 333962 ||||| |||||||| ||||| || || | | || ||| | ||||| ||||| || || Sbjct 14557 TGGTTCGTCGGCTCATCAAGCAGCAGGATGTCGGCCTTCTGAAGCATGGCACGGGCCAGC 14498 Query 333963 GCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAA----TTGGG---GCAGATTGGCG 334015 |||||||||| ||||| || || ||||| ||| | |||| ||| | |||| Sbjct 14497 TCGAGTTTCATCTTCCAACCACCGGAAAGGGTGCCCACGGCCTGGGCCTGCATCTCGGCG 14438 Query 334016 CTCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 334075 | ||||| || | || || ||| || | || | | |||| Sbjct 14437 GT-------GAAGCCCACACCGGCAAGGGTGTCCTCGACCTCCTTGCGGG---GAGTGTT 14388 Query 334076 TTCCTTTACTTGTTCATCATTGGCA---ATGAAGTCAATGATAGCCATGTTAGAATCGGA 334132 ||| | | || |||| |||| |||||||| | | | || | || || || Sbjct 14387 ---CTTCA---GGTCCTCATCGGCAAGGATGAAGTCCACAACGGACAGTTCAGCCTCCGA 14334 Query 334133 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTC 334192 | | || | ||| || ||| | |||| || | | || |||||| || || Sbjct 14333 AGCCTGCAGGTTGTGCTCGACGAACACAGTCTTGAGCTCGTCACGGCTGGGGAAGCCCTC 14274 Query 334193 AAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACA 334252 |||||| ||||| || |||||||| || || || ||||| ||||| || || || Sbjct 14273 AAGCTGGCCGTTGGAGATGGCGCGCATGAGCGTCGACTTACCACAACCGTTGGGACCGCA 14214 Query 334253 CAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCC 334312 ||||||||| |||| ||||||||| || | || | |||||||| | ||| | || Sbjct 14213 CAGACCGTAACGGTGTCCACGCTTGAGGCGAAGACGAGCGTTGTTCAGCAAAATCATACC 14154 Query 334313 ACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||| || || || || || || || | ||||| || Sbjct 14153 ACCGTAGGCAAGCGAGAACTCGCAGTTGCACAGGTC 14118 >seq141 Length=36708 Score = 120 bits (132), Expect = 7e-22 Identities = 261/383 (68%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| ||| | |||||||| || | | || ||| Sbjct 15317 TTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAAGCTTCTCGAAC 15258 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||||| || ||||||||| | ||| | |||| || ||||| || ||| Sbjct 15257 GAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCCTGCCTCATGTACTCCAAG 15198 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 || |||||||| || || || || | | ||| | || || || | | Sbjct 15197 CTGGTCAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGTGACGCTGTGGTGAT 15139 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAAC 243583 ||| | || ||| | ||||| | | || || || ||| || ||||||||||| | | Sbjct 15138 CGAGCACGAGTTCGTGCGCGACTCGCTCCC-TGTCGAGCTCATCGGCATGAACTCGGGGC 15080 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 ||||| | |||||||| || ||||| || ||||| | || | |||| || || Sbjct 15079 TCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTACTCGCTGGGAG-TGTCC 15021 Query 243644 AAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||| | |||||| ||||||||| || | || ||||| | || ||||| || || || Sbjct 15020 AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 14961 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||||||||| |||||||| Sbjct 14960 ACCAACTTCTTCGAGAAGCGTGT 14938 >seq125 Length=38444 Score = 105 bits (116), Expect = 1e-17 Identities = 292/440 (66%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 297278 GACCAACCGGTACCGATTCCACTC-GAACCATTCACCAGAATGCTCGGAATAACAGGCAC 297336 |||||||| ||||| || || ||| | |||||| || || | | ||||| | |||||| Sbjct 13290 GACCAACCTGTACCAATACC-CTCTGCACCATTGACAAGCAGCATTGGAATGATAGGCAC 13348 Query 297337 ATAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTC 297396 || || | ||||| | | | ||| ||||| | || || || |||||| Sbjct 13349 GTAGTATACGGGTTCAACCGGGAAACCATCATCGTCGGCGTAGGCCAACAGGGCATCGTC 13408 Query 297397 CGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACT 297456 ||| ||| ||| | ||||| || | || ||||||||||| || | ||| Sbjct 13409 TTCTTCGGGGAATACCAGGCGAGTGTGCTTTTGAAGCAACGTGAAAATATAACGAGGACT 13468 Query 297457 CGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGT- 297515 ||| |||||||||||| |||| | | ||| ||||| || || || | |||| Sbjct 13469 AGCGGCATCCTTACCACCTTGCAGCCGTGTACCAAACTGACCGGATGGATAC-AGCAGTG 13527 Query 297516 TGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATG 297575 || || ||| || ||| | ||||| || | || || || ||| ||||| |||| Sbjct 13528 GGAGATTGTTGGAGCCCACAAAGTCCTGGGCCATATTAACAATCGTCGAGTGCAGCGATG 13587 Query 297576 CTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC-GTAACCGCTGAACTGTGCAACCTTC 297634 |||| || ||||| || || | || || || || |||||| | ||||| |||||| Sbjct 13588 CTTCACCGTGGTGGTAAGCTGTGTGTTC-GCTACAGTAACCAGCCAGTTGTGCCACCTTC 13646 Query 297635 ACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTG 297694 || ||| |||| | |||||||| || | | | | || || || || ||| ||| Sbjct 13647 ACCTCGCTCGTTAGTTTGCGCTTCAAGCAAGCAAAAAGAACCTTACGCTGGGAAATTTTC 13706 Query 297695 AAACCATCAACGACCGACGG 297714 | ||| ||||| |||||||| Sbjct 13707 AGACCGTCAACCACCGACGG 13726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102827872032150