Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq666 226 3e-54 seq141 179 4e-40 >seq666 Length=16246 Score = 226 bits (250), Expect = 3e-54 Identities = 872/1346 (65%), Gaps = 58/1346 (4%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || |||| |||||| ||||| | |||| ||||| |||||||| || || || || Sbjct 14050 TACATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAA 14109 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTT 114059 || || |||||||| |||| || || ||| || ||||| | || | || | | Sbjct 14110 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACATTC--T 14167 Query 114060 CCTTGAGGGCGTCCCAGTCGTA-------GTTGA-GCTTTGTCTCCCCCTGCCACATATC 114111 |||| || || |||| || | | || | || | |||| |||| || Sbjct 14168 CCTTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAGGAGTGACACCCC-----ACATGTC 14222 Query 114112 AAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAAC 114171 ||||||| | ||| | | ||| ||||| |||| || |||||||| |||||| | Sbjct 14223 GAACTGGAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCC---AA 14279 Query 114172 CTCC--GCCAATTCGGAGCT-CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCG 114228 |||| | |||| | | || ||| | | |||| || || ||||| || ||| Sbjct 14280 CTCCTTGGCAATCTCCATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGTT 14339 Query 114229 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACA 114286 |||| | |||| ||| ||||||||| ||| || || || || || Sbjct 14340 CTTGTTCAACTCACGTGCCTGCTCGCTCTCAAACGCGTAGTT--CATAAGGATGAACGCA 14397 Query 114287 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 114346 || || |||||||| ||||| | || | || || || | ||| || ||||| || || Sbjct 14398 TCAGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGCC 14457 Query 114347 GTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 114405 ||| | || || || | || ||||| ||| | || || || || || ||||| Sbjct 14458 -TCTACGACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTT 14516 Query 114406 TGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAG 114464 || | ||||| | | ||| ||| | || || || || | ||| || | | Sbjct 14517 GGTTACTTCATACAACCTTTTGTAGTTGAACACACCG-------TCCTCCACAAACATCG 14569 Query 114465 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 114524 | || || | ||||||| ||| ||||||| |||||| | ||||||||| || | Sbjct 14570 GCAGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATCA 14629 Query 114525 TTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 114582 ||| ||||| || || | || ||||||||||| | || || ||||| Sbjct 14630 CTTCACAGCACAAGTTGCTGGAGCGG--ATCGTGCCCAAGTTTTGCTGGTTCGACTTGCG 14687 Query 114583 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 114642 |||| || |||||||| |||||| |||| |||||||| | || | | || || Sbjct 14688 GTTAGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGAT 14747 Query 114643 AGCCTTCCAGACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCG 114697 || ||| | | |||| ||| | | | ||| || || ||||||| |||| Sbjct 14748 GGCAAACCACAGTT-----GCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTCTCG 14802 Query 114698 TACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTA 114757 ||||| |||||| | |||||||| |||||| | ||| |||| || || || | | Sbjct 14803 TACTTCTCGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCA 14862 Query 114758 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGG 114817 | |||||||| | | ||| | ||| | || |||||||||||||| || || ||| Sbjct 14863 TTGGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGG 14922 Query 114818 ATCCAGAGAGCTGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACG 114876 | ||| || || |||| | || || ||| || || | | || || || || Sbjct 14923 ACCCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACT-CGTTACCGTGGTTCTTGCG 14981 Query 114877 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 114936 ||| ||||| || || | | ||| |||||||| || |||||||| | |||| ||||| Sbjct 14982 CAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCC 15041 Query 114937 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCAT 114993 ||| || || || |||||| || || | || || | ||||| || || | ||| Sbjct 15042 CTTGCGTTTACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACAT 15101 Query 114994 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGAC 115053 || ||||| |||| || ||| || || || || || || |||| | || Sbjct 15102 GGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGGAT 15161 Query 115054 ATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAG 115113 | || || || ||||| || || |||||||| ||||| || |||| | | || Sbjct 15162 GTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAG 15221 Query 115114 ACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACAT 115173 || |||| || || || |||||||| ||| | || | | |||||| |||| Sbjct 15222 TGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAA 15281 Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-T 115232 ||| || | ||| || |||||||||||||| || || || ||||| |||| | || | | Sbjct 15282 TTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGA-ACTTCT 15340 Query 115233 GGGACATCTTATCGTAGGTCTCCAAG 115258 ||||||| ||||| ||||||||| Sbjct 15341 GGGACATGAGCTCGTACGTCTCCAAG 15366 >seq141 Length=36708 Score = 179 bits (198), Expect = 4e-40 Identities = 368/535 (69%), Gaps = 19/535 (4%) Strand=Plus/Plus Query 125748 CCAGC-TTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 125806 ||||| ||| ||| || || || ||||||||||||||||| ||||| || | || | Sbjct 14917 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAG 14976 Query 125807 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 125866 || | ||||| | || || |||||||| ||| | || | | ||| || | | Sbjct 14977 ATCATGTCCATCCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAG 15036 Query 125867 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 125926 | ||| ||||| || | ||| |||||||||||| |||| | | |||||||| ||| Sbjct 15037 TAGAGCAGACGGTCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCG 15096 Query 125927 ATGAGGTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCG 125985 ||||| | ||| ||||||| ||| | |||| | | ||| || |||| || || || Sbjct 15097 ATGAGCTCGACA-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACAGCGTCACG 15155 Query 125986 CACGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-- 126042 |||||| |||| | | | | || ||| | | ||| || |||| |||| | Sbjct 15156 CACGATCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTGACCAG---CTTG--GAGTACAT 15209 Query 126043 ----CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGC 126098 || ||| || || ||| | |||||||||||| |||||| || |||||||||| Sbjct 15210 GAGGCA-GGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGC 15268 Query 126099 ACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGA 126158 || || ||||||||||| |||||||| | |||||| || | || || || ||||||| Sbjct 15269 TTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGA 15328 Query 126159 AGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGAC-TTT 126217 ||||||| |||||||| || || || | || || || | |||| || || Sbjct 15329 AGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGA-CGACACGCGC 15387 Query 126218 GTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 126272 | ||| ||||||| | |||||| | || || |||| || |||||||| |||| Sbjct 15388 GGGTCGCACCACTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCT 15442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597326054532120