Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq1305 95.1 9e-15 seq67 86.0 5e-12 seq397 82.4 6e-11 >seq1305 Length=8370 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 ||||| |||| || || ||||| | ||| | ||||||||||| ||| | | Sbjct 4828 ACGGCGGGCGCGCACCGCCTGTGGTCGCACCGCGGCTACAAGGCCAAGCTGCCGCTGCGC 4887 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 |||||||| ||| ||| |||| |||| | |||||| ||||| || | Sbjct 4888 GTGTTCCTCATGCTGTGCAACTCGATGGCCTTCGAAGGGACCATCTTCGAGTGGTCGCGC 4947 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || ||||||||| ||| ||||||||||||||||| |||||| | | | Sbjct 4948 GACCACCGCGTGCACCACAAGGGCTCGGACACGACGGCCGACCCGCACAACTCGGAGCGC 5007 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 || ||| ||||||||| |||| ||| ||||| || |||| || Sbjct 5008 GGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAAGCAC 5052 >seq67 Length=45614 Score = 86.0 bits (94), Expect = 5e-12 Identities = 175/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 108342 CGGGT-TCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGC-C 108399 ||||| ||||| | || |||| |||||| ||||| | ||| ||||||||| | Sbjct 14641 CGGGTCTCGGTATCACCATGGGCGCGCATCGGTTGTGGGCGCACCGCAGCTACAAGGCGC 14582 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 || || ||| | | | ||||| ||| ||| || |||| ||| ||| ||| Sbjct 14581 ACAGCATCGTGC-GCTTCTTCCTCATGCTGTGCAACTGCATGGCCAACCAGGGCACTATC 14523 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCA 108519 || ||| | ||| ||| | || |||||||||||||| |||||| ||| ||||| Sbjct 14522 TTCCACTGGAGTCGCGACCACCGCGTGCACCACAAGTACTCGGACACGGTGGCTGACCCG 14463 Query 108520 CACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGAC 108579 |||||| || | | || |||| ||| ||||| |||| ||||| || | | |||||| Sbjct 14462 CACAACTCCGGCCGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAAGAAGGAC 14403 Query 108580 CCCGACGTGATCTCG 108594 ||| |||| |||| Sbjct 14402 CCC--CGTGTGCTCG 14390 >seq397 Length=23837 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/152 (72%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 108453 CACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGC 108512 ||||||| || ||| || ||| ||| | || |||||||||||||| ||||| | || Sbjct 13107 CACCATCTTCCACTGGTCGCGCGACCACCGTGTGCACCACAAGTACTCGGACACTAGCGC 13166 Query 108513 CGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGAC 108572 |||||| |||||| | | || |||| ||| ||||| |||| ||||| || | | Sbjct 13167 CGACCCGCACAACTCGGGACGCGGCTTCTTCTTCGCGCACATGGGCTGGCTGCTGGTCAA 13226 Query 108573 CAAGGACCCCGACGTGATCTCGGCCGGTCGAA 108604 ||||||||| | ||| || ||| || |||| Sbjct 13227 GAAGGACCCCAAGGTGGTCAAGGCTGG-CGAA 13257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381755635614216