Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq911 143 3e-29 seq1010 141 9e-29 seq414 138 1e-27 seq666 111 1e-19 seq688 105 6e-18 seq141 98.7 9e-16 >seq911 Length=12855 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 12050 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 11991 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 11990 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 11931 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||||||||||||| ||||| ||| | ||||| ||| || Sbjct 11930 ATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCAC 11872 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||||||||| || || || ||||||||||| Sbjct 11871 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11824 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 12278 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 12219 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 12218 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 12159 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||||||||||||| ||||| ||| | ||||| ||| || Sbjct 12158 ATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCAC 12100 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 12099 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 12051 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | ||||| || | |||||||| || || || ||||| |||| Sbjct 12507 TCCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGCT 12448 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 12447 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 12388 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| ||||||||||||| ||||| ||| | ||||| ||| | Sbjct 12387 AATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCA 12329 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 12328 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 12279 >seq1010 Length=11520 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||| || | ||| ||||| || || || ||||| |||| Sbjct 284 TCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 225 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 224 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 165 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||||| || |||||||||| ||||| ||| | ||||| ||| | Sbjct 164 AATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCA 106 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 105 CGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 56 >seq414 Length=22499 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || || || ||||| |||| | Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| || |||||||||| ||||| ||| | ||||| ||| || Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGT-CGATCGAGTCCGACGGCTCCAC 179 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||||||||| || || || || |||||||| Sbjct 180 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 227 >seq666 Length=16246 Score = 111 bits (122), Expect = 1e-19 Identities = 332/507 (65%), Gaps = 13/507 (3%) Strand=Plus/Plus Query 145693 TTGCCGCACGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGT 145752 |||| | ||||||| | |||| ||| || |||||||| | || | ||| ||| Sbjct 13644 TTGCAGGTCGAGGCC-CTGCTT----GTCCACCGTGAACTGGATGGCGTCAGCTTTCGGG 13698 Query 145753 TTTGTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATG 145812 | ||||| ||||||||||| |||||||| |||| ||| | ||| ||||| ||| Sbjct 13699 CGTCCGCGCATGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATG 13758 Query 145813 CTCGACATGACCGAGTACGTGG---GTTCGGCGACAAACAAATTTAGAGATTGGCTCTGA 145869 ||| ||| | | ||| | ||||||| | || || || || ||||| Sbjct 13759 ---GACGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGG 13815 Query 145870 TCAATGAAAGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCA 145928 |||| | || ||| |||||||| | || ||| | || |||| || || ||||| Sbjct 13816 CAAATGTA-GGCGCCACGGTCGGCCGACAGGTCCAGCACTGACTTCTGCTTGATCTCCCA 13874 Query 145929 TGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCC 145988 | || || | |||||||||| | || || | | | |||||||| || || Sbjct 13875 CACCGTCTTGTACTTCTCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAACC 13934 Query 145989 ATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGC 146048 | ||| || || | ||||| | ||| || || | ||| ||| || | || | Sbjct 13935 ACCGTCGTTCAGAATCTGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGATCAGCTC 13994 Query 146049 CTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACAC 146108 ||| || || |||| ||| || | | |||||||| || || || || | |||| Sbjct 13995 CTTCATCAGGTACTTGTTAACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTACAT 14054 Query 146109 GTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGT 146168 |||| ||| | ||||||| ||||||||||| || | ||||| || || | ||| || Sbjct 14055 GTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGT 14114 Query 146169 AGGCATGTACGCCACCAGCAAAGAGTT 146195 |||||| |||||||||| ||||| Sbjct 14115 CGGCATGGGGGCCACCAGCAGCGAGTT 14141 >seq688 Length=17951 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || || |||||| || || ||||| || || ||| ||||| Sbjct 3732 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3673 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || ||||| ||||||||| |||||||||||||| |||| || Sbjct 3672 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTG-TC 3614 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 3613 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 3554 Query 127105 AATCTGCATG 127114 ||||||||| Sbjct 3553 GATCTGCATG 3544 >seq141 Length=36708 Score = 98.7 bits (108), Expect = 9e-16 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | ||||||| || || || || ||||| |||||| Sbjct 15095 GGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTCTAC 15036 Query 47472 CAGCTAA-AGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACAT 47530 ||| ||| ||| ||||| ||| || | |||| || ||||| | ||| ||| || Sbjct 15035 TCGCTGGGAGTGTCC-AAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGAT 14977 Query 47531 TTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||| |||||||||||||||| ||||||||||| || ||||| || Sbjct 14976 CTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 14929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478873469360