Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq911 114 1e-20 seq1010 111 1e-19 seq414 109 5e-19 seq666 89.7 5e-13 >seq911 Length=12855 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || |||||||| || ||||| ||||| || || ||| Sbjct 12053 ATGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 11994 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || |||| || || || ||| | |||| || |||||||| || Sbjct 11993 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 11934 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || |||||||| || |||| || | || | | ||| || | ||| Sbjct 11933 GGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTC 11875 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | ||| |||||||| || || || || ||||| |||||| Sbjct 11874 CACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCATC 11823 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| || |||||||| || ||||| ||||| || || ||| Sbjct 12281 ATGCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 12222 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || |||| || || || ||| | |||| || |||||||| || Sbjct 12221 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 12162 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || || |||||||| || |||| || | || | | ||| || | ||| Sbjct 12161 GGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTC 12103 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| |||||||| || || || || || || ||||| Sbjct 12102 CACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12052 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| ||||| || | | ||| || |||| || || ||||| ||||| || || |||| Sbjct 12508 TTCCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGC 12449 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || || |||| || || || ||| | |||| || |||||||| || | Sbjct 12448 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGG 12389 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 |||||||||| || || |||||||| || |||| || | || | | ||| || | ||| Sbjct 12388 GAATGCCTTCCTTGTCCTGAATTTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCC 12330 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| |||||||| || || || || || || ||||| Sbjct 12329 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12280 >seq1010 Length=11520 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| ||||| || | || ||| || |||||||| || ||||| ||||| || || |||| Sbjct 285 TTCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 226 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | || || |||| || || || ||| | |||| || |||||||| || | Sbjct 225 TCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGG 166 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 |||||||||| || || ||||| || || |||| || | || | | ||| || | ||| Sbjct 165 GAATGCCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCC 107 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| |||||||| || || || || || || ||||| Sbjct 106 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57 >seq414 Length=22499 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | || ||| || |||||||| || ||||| ||||| || || ||||| Sbjct 1 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 60 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || |||| || || || ||| | |||| || |||||||| || ||| Sbjct 61 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGA 120 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || ||||| || || |||| || | || | | ||| || | ||| || Sbjct 121 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCAC 179 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| |||||||| || || || || || || |||||| Sbjct 180 GTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATC 228 >seq666 Length=16246 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 124178 GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAAT 124237 ||||||| | || ||||||||| ||||||| |||||||||||| | |||||||| || Sbjct 14154 GCACGGTCTTCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCTACTGCTCAGAT 14095 Query 124238 TTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTT 124297 || || |||||||| || ||||||| | ||| ||| ||||| || || ||| | Sbjct 14094 CTTGGGCAACAACGAGTCTATCGAGCCCTACACGTCCAACATGTACAACCGTCGTGTGCT 14035 Query 124298 AGCCGGCGATTT 124309 || ||||| || Sbjct 14034 TGCTGGCGAGTT 14023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451982357002440