Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq666 170 3e-37 >seq666 Length=16246 Score = 170 bits (188), Expect = 3e-37 Identities = 339/494 (69%), Gaps = 6/494 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 |||||||||||||||||| ||||||| | || | | | || ||||||||||| Sbjct 13662 CTTGTCCACCGTGAACTGGATGGCGTCAGCTTTCGGGCGTCCGCGCATGTAGTACATGCC 13721 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||||| ||| |||| | ||||||||| | || ||||| | | | || Sbjct 13722 CGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTTGCTGATGGTCGG 13781 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 |||||| ||||| ||||| || ||||| || ||| ||| ||||||| || || || | Sbjct 13782 GTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATG-TAGGCGCCACGGTCGGCCG 13840 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 || | | | | ||||||| |||||||||||||||||| || || || || Sbjct 13841 ACAGGTCCAGCACTGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGT 13900 Query 204078 GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA-TCCT 204135 | || | | | ||| | ||| | || || |||| || | ||| | | | Sbjct 13901 TGTCCGGGATGGCCT-TCACCTTCTGCACGGAACCACCGTCGTTCA-GAATCTGATTGCG 13958 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 || | ||| ||||||||| |||||||||| || ||||| ||| | ||| Sbjct 13959 AACTTCAGGCGTCCAGATGCCCAACTCGATCAGCTCCTTCATCAGGTACTTGTTAACGAT 14018 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 | || || || | ||||| | ||| || ||| |||| ||| | || |||| | Sbjct 14019 CGTGAACTCGCCAGCAAGCACACGACGGTTGTACATGTTGGACGTGTAGGGCTCGATAGA 14078 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| || |||||||| || ||||| |||||||| |||| ||||| || Sbjct 14079 CTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGTCGGCATGGGGGCCACCAGCAGCGA 14138 Query 204316 GTTGCGCACACCGT 204329 |||||| | ||||| Sbjct 14139 GTTGCGAAGACCGT 14152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795118533405840