Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq141 232 7e-56 seq911 145 8e-30 seq414 140 3e-28 seq1010 138 1e-27 seq688 116 4e-21 seq67 95.1 1e-14 >seq141 Length=36708 Score = 232 bits (256), Expect = 7e-56 Identities = 420/609 (69%), Gaps = 4/609 (1%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| | ||| || ||||| |||| ||||||||| | | ||||| ||||| || Sbjct 15206 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 15265 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | || |||||||| || || || |||||||| || |||| | ||| ||||| Sbjct 15266 AGCTTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 15325 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||||| || || || || |||| ||| || || | | | | | Sbjct 15326 AGAAGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACACGC 15385 Query 133067 TGCTGG-CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || || || ||| |||||||| | ||| || | | ||| ||||| || || || Sbjct 15386 -GCGGGTCGCACCACTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCTCA 15444 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTC 133185 ||||| || || || |||||| | | | ||| ||||| || || | Sbjct 15445 ATGGCACGCAGCAGGTGGGTTTTCTCGACAATGTCCTTGATGTACGTGTCAATAAGCAGC 15504 Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 || |||| |||||||| | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 15505 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCC 15564 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || ||| ||||| || | ||| | | ||| || |||||||| || || || Sbjct 15565 TCAGGCACTTGCACCTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTGACTATACCATCA 15624 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||||| || || ||||||||||||||||||||||| |||||||||||||| | | | | Sbjct 15625 CTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGGTTC 15684 Query 133366 TCCCAGTCGCGCGTGTCCTTGGAC-AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 ||||||| | | | | || || || |||| ||||||| | ||||| || || ||||| Sbjct 15685 ACCCAGTC-CTTGAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAAGCCTC 15743 Query 133425 GGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCG 133484 ||| || |||||||| ||||| ||| | || ||||| || | ||| || ||| Sbjct 15744 GGCCTTCTTGTACATCTGCCACACGTCGTGCTCCTGAATGGGGAAGAGCACGAAGCGGTT 15803 Query 133485 GGGGTTTTC 133493 |||||| || Sbjct 15804 GGGGTTCTC 15812 >seq911 Length=12855 Score = 145 bits (160), Expect = 8e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | Sbjct 11821 AAGATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 11880 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | | |||| | || | ||||| | ||||| || || |||||| | || Sbjct 11881 TCGGACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGA 11939 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 11940 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 11999 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 12000 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 12051 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | | Sbjct 12052 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 12111 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||| | ||||| || || |||||| | ||||| Sbjct 12112 GACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12170 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 12171 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12230 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| ||||||||||| || | || ||| Sbjct 12231 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGC 12279 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | | Sbjct 12280 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 12339 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | ||||| | ||||| || || |||||| | ||||| Sbjct 12340 GACTCGATCGACAACG-TCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCA 12398 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 12399 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 12458 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || |||| ||||||| ||| || | ||||| Sbjct 12459 CATCCAGAAGGAGTCTACTTTGCACCTGGTGCTTCGTCTGCGCGGCGG 12506 >seq414 Length=22499 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | Sbjct 230 AAGATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 171 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | | |||| | || | || || | ||||| || || |||||| | || Sbjct 170 TCGGACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGA 112 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 111 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 52 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||||||||| ||||||||||| || | || || Sbjct 51 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 1 >seq1010 Length=11520 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||||| | ||||| ||| | | Sbjct 57 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 116 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | ||||| || || |||||| | ||||| Sbjct 117 GACTCGATCGACAACG-TCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCA 175 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 176 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 235 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| ||||||||||| || | || || Sbjct 236 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 283 >seq688 Length=17951 Score = 116 bits (128), Expect = 4e-21 Identities = 144/192 (75%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 3545 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 3604 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||||| | | |||| | || | ||||||| ||||| || || || |||||| |||| Sbjct 3605 GACAGCATTGACAACG-TCAAGCAGAAAATCCAGGACAAGGAAGGCAT-CCCGCCTGACC 3662 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || ||||||| Sbjct 3663 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCGGACTACA 3722 Query 38422 ACATCCAAAAGG 38433 ||||||| |||| Sbjct 3723 ACATCCAGAAGG 3734 >seq67 Length=45614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 ||||| |||||| ||||| ||||| || || | ||| ||||| |||||||| |||| || Sbjct 11523 GGAAT-CCCGCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCG 11581 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||| || |||||||||||||| ||||| | || ||||| ||||||||||| || | Sbjct 11582 CACTCTGTCGGACTACAACATCCAGAAGGAGTCTACCCTGCACCTGGTGCTGCGTCTGCG 11641 Query 38465 AGGCGG 38470 || || Sbjct 11642 CGGTGG 11647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149735781760