Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq706 111 1e-18 >seq706 Length=15625 Score = 111 bits (122), Expect = 1e-18 Identities = 651/1031 (63%), Gaps = 26/1031 (3%) Strand=Plus/Minus Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750 ||||| ||||| |||| ||||| || || | || | || | |||||| || | Sbjct 14250 ACCTTTGGAATGCGAGTCGATCCGCCCACCAGCACCACCTCGTTCACCTGGTTCTTGGAC 14191 Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAA 517810 | ||| || || || ||||| | ||||| || | | | || || || ||| Sbjct 14190 AATTTCGAGTCACGTAGAACTTGCGCGACGGGATCCATCGTCTTGCGGAAGAATTCGGAA 14131 Query 517811 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 517870 || || || |||||| || | || | || ||| ||||||| || || | || Sbjct 14130 CAGAGGTCCTCGAATCGCGCACGGGTGATGGTCGAGTTAAAATCAATGCCATCTAGCAGC 14071 Query 517871 GAATCAACTTCAATCGTA-GTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 517929 ||||||| || || ||| | || | ||||| || | | || || || |||||||| Sbjct 14070 GAATCAATCTCTAT-GTACGCCTGCGCCGAAGTGGACAACGTCCGCTTGGCCCGTTCACA 14012 Query 517930 TGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT----GATTCAAATCTGTTTTATATT 517985 || || | || | || || || |||| || || || ||| | | |||| Sbjct 14011 CGCCGTACGGAGACGGCGCAAAGCAC--GCTGGTTCGCCGA--CATATCCCTGTGGTATT 13956 Query 517986 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 518045 | | |||||| || | ||| | | || ||||| || ||||| ||||||||||||| Sbjct 13955 TGCGCTTGAACTCGGCCACAAAGAACTCGACTAGACGGTTGTCAAAGTCTTCACCTCCCA 13896 Query 518046 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 518105 | | |||| || | ||||| | || | ||| | ||| || || | | | || | Sbjct 13895 AGTGCGTATCACCAGCAGTAGCCTTCACCTCGAAGATTCCTTCCTCGATCGTAAGCAGCG 13836 Query 518106 TTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 518165 ||||||| ||||| || || | ||| || || | || | | | | | || | Sbjct 13835 ATACATCAAACGTTCCGCCGCCTAGATCGAAGATCAACACGT---TGTGCTCGCCTCCTT 13779 Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 |||| || | || || |||| ||||||||| || || || ||||| || | || || | Sbjct 13778 TTTTGTCCAAGCCGTAGGCAATAGCAGCAGCGGTCGGCTCGTTAATGATACGCAGCACGT 13719 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | | ||||||||| ||| ||||| || || ||||| | || || || || ||||| | Sbjct 13718 TCAAACCAGCAATGACTCCGGCATCCTTGGTCGCTTGGCGCTGCGAGTCATTGAAATACG 13659 Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345 | || || || | || |||| | |||| || || || | || ||| | | Sbjct 13658 CCGGCACCGTCACCACCGCATTCTTCACTTGCTTGCCGATGAATGCCTCTGCAATCTCGC 13599 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCTTGGATTC-AT 518402 ||| || | | | ||| || || || | || || |||| | ||| ||||| Sbjct 13598 GCATCTTGATCAGCACCATGGACGATATCTCCTCGGGCTGGAACGT--CTTCGATTCGCC 13541 Query 518403 TTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACTTTAAATGGCC 518459 |||| || || | | | || || | | | | ||||| || |||| Sbjct 13540 CTTGAACTG-CACCACGACTTGCGGCTTGTCCTCGGGACCGCGCGCCACTTTGAACGGCC 13482 Query 518460 AGTATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTCTACCAATTAATCGTTT 518517 ||| || ||||| || || ||||| | || | || | | || || || ||||| Sbjct 13481 AGTGCTTGATATCCGACTG--CACTTCAGTATCCGTGAACTTGCGGCCGATCAAACGTTT 13424 Query 518518 TGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAAT 518577 ||||||| | ||| ||| | || || || |||| | || |||||||| || || Sbjct 13423 GACATCAAACACAGTGTTGTGCGCGTTCATGGCCACTTGGTTCTTCGCTGCATCGCCGAT 13364 Query 518578 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 518637 || |||| | ||| || || | || || ||||| || || || || || || ||||| Sbjct 13363 AAGTCGTTCCGACTCGGTGAAGGCTACGTACGATGGTGTCGTACGGTTGCCCTGGTCATT 13304 Query 518638 CGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAA 518697 ||||| || || || |||||||||| || || ||||| | | || || || | Sbjct 13303 GGCAATGATCTCCACGCGGTCATTTTGCCACACCCCAACACACGAATACGTCGTGCCGAG 13244 Query 518698 ATCAATACCAA 518708 ||||||||||| Sbjct 13243 ATCAATACCAA 13233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780639339668434