Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq666 199 5e-46 seq141 125 9e-24 seq99 114 2e-20 seq125 91.5 2e-13 >seq666 Length=16246 Score = 199 bits (220), Expect = 5e-46 Identities = 425/629 (68%), Gaps = 7/629 (1%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| ||||||| || ||| | || ||||| | || || | | | Sbjct 15425 CCGCAGCAGATGATCATGCGCGTGGCGCTAGGCATCCACAAGAGCGACATCAAGGCGGCC 15366 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 |||||||| ||||| ||||||| | || | |||| ||||| || || || ||||| Sbjct 15365 TTGGAGACGTACGAGCTCATGTCCCAGAAGT-TCTTCACGCACGCCACGCCCACGCTCTT 15307 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||||||||| || ||| | |||||| ||||| || ||| | | || | |||| || Sbjct 15306 CAACGCTGGCACGCCACGTCCCCAATTGTCCTCGTGCTTCTTGCTGGCTATGCAGGACGA 15247 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || || | |||||||||| ||| || | | |||||| ||||| ||||||||||| Sbjct 15246 CTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCCTGCATCTCCAAGTGGGCTGG 15187 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 || || || || || || | || | |||| ||| || |||| || || Sbjct 15186 AGGAATTGGCATTAGTATGCACAACATCCGTGCCACCAACAGCTACATCCGAGGCACCAA 15127 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 || || |||| || || || ||| | || || ||||||| || || ||||| || Sbjct 15126 CGGCTCGTCCAATGGCATCATCCCCATGTTGCGGGTGTTTAACGATACTGCTCGCTACGT 15067 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||| | || || |||||||| ||| |||| | || || ||||| |||||||| Sbjct 15066 GGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTCGCTATTTACCTGGAGCCTTGGCACGC 15007 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087 ||| | | |||||| | || ||||| ||||| ||| | ||| | ||| || Sbjct 15006 AGATGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGGTAACGAGTTGCATCGGGCGCG 14947 Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147 ||| | |||| ||| || ||| | || ||||| ||||||||| | || || | | ||| Sbjct 14946 CGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAGCCAATGG 14887 Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGG 112206 ||| ||| | | || || || | | || || || |||| ||| ||| | |||||| | Sbjct 14886 CAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTACGAGTGCTG-GGGTGACG 14828 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGAG 112235 ||||||| | |||||| ||||||||| Sbjct 14827 AGTTTGAGACGCTCTACGAGAAGTACGAG 14799 >seq141 Length=36708 Score = 125 bits (138), Expect = 9e-24 Identities = 190/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 || || |||| ||| || ||||| || ||||| | || || | ||||| | Sbjct 15500 CTTATTGACACGTACATCAAGGACATTGTCGAGAAAACCCACCTGCTGCGTGCCATTGAG 15441 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || | || ||| | || |||||||| | ||||| | ||||||| || | || Sbjct 15440 ACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGACCCG----CG 15385 Query 102168 CGT----TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| |||| | || || || | || ||||| || ||||||||||||||||| Sbjct 15384 CGTGTCGTCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTTCTTCTC 15325 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || ||||||||| | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 15324 GGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTAAGCTT 15265 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 15264 CTCGAACGAGCTCATCAGCCGTGACGAGGG 15235 >seq99 Length=40689 Score = 114 bits (126), Expect = 2e-20 Identities = 280/417 (67%), Gaps = 7/417 (2%) Strand=Plus/Plus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| ||||| || ||||| || || |||| || | ||||| ||||| |||| || Sbjct 35266 GATCTGCCGATCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCCGCGCGGTT 35325 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTA-TCAAAACCATCCATCTCTGTCAAAA 15996 ||| | || | || || | ||| | | | | | |||||||||||||| || || Sbjct 35326 CGTACCAGCAAGCACCACCACACCC-TCACTTGAGTTGAAACCATCCATCTCGACCAGAA 35384 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACT-GCGT--T 16053 ||||||||| || | ||| || || || || || | | | | || || || | | Sbjct 35385 GCTGGTTAAGTGTGTTTTCACGCTCGTCGTT-GCCGCCCGAGAAGTTGCCCTTGCTTCGT 35443 Query 16054 GCTT-TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 || | |||| ||||| || ||||||||||| || ||||| || || | ||||| Sbjct 35444 GCGCGTGCCACAGCATCGATTTCATCAATGAACACAATGCACGGAGCGTTCGCACGAGCC 35503 Query 16113 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172 | | ||||||||| || ||||| | ||||||||||| |||||||| | |||| Sbjct 35504 TCCTTAAAGAGATCACGCACACGGGACGGACCCACACCAACGAACATCTCGATGAAGTCC 35563 Query 16173 GCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | ||| || ||| || || ||| ||||| || |||| ||| || || Sbjct 35564 GAACCAGAAATGCTGAAGAATGGAACGCTAGCCTCACCAGCCGTGGCCTTGGCCAGCAGC 35623 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 |||||||| ||||| || || |||| || ||||| || |||||||| ||| Sbjct 35624 GTCTTACCTGTACCGGGGGGGCCAACGAGTAGCGCACCCTTGGGGATCTTGGCACCA 35680 >seq125 Length=38444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 176912 TTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACC 176971 || |||||||||||||| || ||||| ||||| || ||||| |||| ||||| || || Sbjct 14409 TTACCACGAAGAGGGAAAACGCCGTACTGATCACGTCCAACAACAGCAAGACCAGCCACT 14468 Query 176972 GCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGA 177024 || || | ||| || |||||||| || |||| || |||| ||||| ||||| Sbjct 14469 GCCAGTGCTTTGGCTGAATCACCTTCCGTCAAAATAAGTGAACACTCACCAGA 14521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620713776016080