Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq666 174 2e-38 seq99 170 2e-37 seq125 86.0 7e-12 >seq666 Length=16246 Score = 174 bits (192), Expect = 2e-38 Identities = 1043/1657 (63%), Gaps = 34/1657 (2%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| ||||| ||||| || |||||| ||||| | ||||| || | ||| ||| Sbjct 13711 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTTG 13770 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | ||||| | || | ||| | ||||||| ||| ||| | ||| Sbjct 13771 CTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCGCCA 13830 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAA 109593 || || |||| || ||| | | |||| || | || ||||| || ||||||||| Sbjct 13831 CGGTCGGCCGACAGGTCCAGCACTGACTTCTGCTTGATCTCCCACACCGTCTTGTACTTC 13890 Query 109594 TTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATG 109653 | ||||| | || || ||| || | || || | || ||||| | |||| || Sbjct 13891 TCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAACCACCGTCGTTCAGAATC 13950 Query 109654 AGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG 109713 ||| | || || ||||| || | || | || || | | || | |||| Sbjct 13951 TGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGATCAGCTCCTTCATCAGGTACTTG 14010 Query 109714 TTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGT 109773 || || | || || |||||||| || ||| ||| ||||| | ||||||||| Sbjct 14011 TTAACGATCGTGAACTCGCCAGCAAGCACACGACGGTTGTACATGTTGGACGTGTAGGGC 14070 Query 109774 TCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATG 109833 |||| | |||| |||||||| | ||| || ||||| ||||| || |||||||| |||| Sbjct 14071 TCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCCGTCGGCATGGGGGCCACC 14130 Query 109834 AGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAA 109893 || || ||| || ||||| | | | | || ||| || || ||||||| || Sbjct 14131 AGCAGCGAGTTGCGAAGACCGTGCTTGATCACATTCTCCTTCAGCGCAGCCCAATCCCAA 14190 Query 109894 CGACC--ACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAG 109951 | || || || ||| |||| |||||| || || | ||||||| | Sbjct 14191 AGTCCGGACGAAGG--AGTGACACC---CCACATGTCGAACTGGAAAACACCCTTGCTGG 14245 Query 109952 CAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCT 110011 | || || |||| |||| ||||||| | ||| ||| ||| | ||| || | || Sbjct 14246 CCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCAACTCCTTGGCAATCTCCATCGACGTCT 14305 Query 110012 CTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCAC 110071 | | | || | || || ||||| || || | |||| || | || || | Sbjct 14306 CCATAGAAGCGTAGTAGATCGTCTCGAAGATGTTCTTGTTCAACTCACGTGCCTGCTCGC 14365 Query 110072 AGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCA 110130 || || | | || || || || | ||| |||| || ||||| |||||||| | ||| Sbjct 14366 TCTCAAACGCGTAGTTCATAAGGA-TGAACGCATCAGCCAGACCTTGAACACCAATACCC 14424 Query 110131 ATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCG 110190 | ||| || || |||||| || || || | | || ||||| ||||| |||| Sbjct 14425 ACGGGACGGTGGCGCATGTTCGACTTGCGCGCCTCTACGACCGGGTAGTAGTTGACGTCG 14484 Query 110191 ATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCG 110250 || ||| || || || |||||| ||| || | ||||| | | | ||| | | Sbjct 14485 ATCACCTTGTTCAGGTTGCGCGTCACCACCTTGGTTACTTCATACAACCTTTTGTAGTTG 14544 Query 110251 AACGTTTTCGTC-TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACAC 110309 ||| |||| ||| ||| | | || || || | ||||| | ||||||||| Sbjct 14545 AACACAC-CGTCCTCC------ACAAACATCGGCAGTGCCACCGACGCCAAATTGCACAC 14597 Query 110310 AGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTT 110366 || ||| || ||||| |||| | ||| ||||||||| || | | Sbjct 14598 AGCCACCTCATCAGGAGAAGTGTACTCCATCACTTCACAGCACAAGTTGCTGGAGCGGAT 14657 Query 110367 AATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTA 110426 || |||||||| | ||| ||||| ||| ||| ||| ||||| || |||||| | Sbjct 14658 CGTG---CCCAAGTTTTGCTGGTTCGACTTGCGGTTAGCTGCGTCCTTGTACAGCATGAA 14714 Query 110427 TGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGAC 110486 ||| ||| || || |||| | | || ||||| ||| | | || || Sbjct 14715 TGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCAAACCACAGTTGCTGTGCATTGAT 14774 Query 110487 AGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGT 110544 || |||| ||| | || |||| ||||||||| ||| | |||||| || | Sbjct 14775 CGTCTTGCG--AGCACGTCCCTCCTTCTCGTACTTCTCGTAGAGCGTCTCAAACTCGTCA 14832 Query 110545 CCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACC 110603 || | ||| || | || || || | | ||| ||||| | ||| || ||| Sbjct 14833 CCCCAGCAC-TCGTAGAGTCCAGGAGCTTCATTGGGGCAGAACAAACTCCACTTGCCATT 14891 Query 110604 CTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCA 110663 | || || | |||||||||||| || || | ||| | || |||| | ||| || Sbjct 14892 GGCTTCCACACGCTTCATGAACAGATCGGGGACCCAAAGGGCGTAGAACAAGTCGCGCGC 14951 Query 110664 ACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTG 110723 ||| | || | ||| ||||| ||| | ||||| || || | | ||| | ||| Sbjct 14952 CCGATGCAACTCGTTACCGTGGTTCTTGCGCAAGTCCAAGAACTCAAACACATCTGCGTG 15011 Query 110724 CCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATA 110780 ||| || || || || | ||||| || ||||| || || || |||||| || || Sbjct 15012 CCAAGGCTCCAGGTAAATAGCGAAAGACCCCTTGCGTTTACCTCCGCCCTGGTCCACGTA 15071 Query 110781 GCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGT 110840 ||| || || | || || |||| | ||| || || || |||| ||| || || || Sbjct 15072 GCGAGCAGTATCGTTAAACACCCGCAACATGGGGATGATGCCATTGGACGAGCCGTTGGT 15131 Query 110841 ACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGC 110900 || | || | || ||||||| |||| ||| ||| || ||||| || || || Sbjct 15132 GCCTCGGATGTAGCTGTTGGTGGCACGGATGTTGTGCATACTAATGCCAATTCCTCCAGC 15191 Query 110901 CCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGC 110960 |||||| || ||||||| | ||||| | ||||| || |||||||| || | Sbjct 15192 CCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTC 15251 Query 110961 CTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 || | || | | ||||| || |||| || ||||| ||||| || || |||||||| Sbjct 15252 CTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGACGTGGCGTGCCAGCGTTGAAGAG 15311 Query 111021 TGTAGGTGTCGCATGAATGAACAGACCT-TGGGACAT 111056 || || || || || |||| | || | |||||||| Sbjct 15312 CGTGGGCGTGGCGTGCGTGAAGA-ACTTCTGGGACAT 15347 >seq99 Length=40689 Score = 170 bits (188), Expect = 2e-37 Identities = 351/514 (68%), Gaps = 16/514 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| ||||| || || || | ||| | ||||||||||| | ||||| Sbjct 35267 ATCTGCCGATCGAATCGACCGGGACGCAGGATAGCCTTGTCAAGAATATCCGCGCGGTTC 35326 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || |||| | || |||||| ||||| || ||| Sbjct 35327 GTACCAGCAAGCACCACCACACC---CTCACTTGAGTTGAAACCATCCATCTCGACCAGA 35383 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 |||||||| | || | ||||||||| |||||| | | | | |||| ||||| Sbjct 35384 AGCTGGTTAAGTGTGTTTTCACGCTCGTCGTTGCCGCCCG-AGAAGTTGCCCTT-GCTTC 35441 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| || || ||||| ||||| || || ||||| ||| ||||| | Sbjct 35442 GTGCGCGTGCCACAGCATCGATTTCATCAATGAACACAATGCACGGAGCGTTCGCACGAG 35501 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | || || ||||| ||||| || || ||||| ||||||||||| | ||||| Sbjct 35502 CCTCCTTAAAGAGATCACGCACACGGGACGGACCCACACCAACGAACATCTCGATGAAGT 35561 Query 11789 TTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | ||| || ||||| ||| ||||| ||| ||||||||| |||| || || Sbjct 35562 CCGAACCAGAAATGCTGAA-GAATGGAACGCTAGCCTCACCAGCCGTGGCCTTGGCCAGC 35620 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || |||||||| ||||| || | ||| |||| || || || |||||||||||||||| Sbjct 35621 AGCGTCTTACCTGTACCGGGGGGGCCAACGAGTAGCGCACCCTTGGGGATCTTGGCACCA 35680 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | | |||||| | || |||||||| || | |||| | |||| |||| Sbjct 35681 AGCTCCGTGAAGCGCTTCTGGTTGCGCAGGAAGTCAACGAACTCCATGATCTCCTTCTTG 35740 Query 11968 GCGGAGTCGATACCCTCAACATCGGTGAAACGAG 12001 || ||| | ||| | ||||| || |||||| Sbjct 35741 GCCTCGTCCACACCGGCCACATCCTTG-AACGAG 35773 >seq125 Length=38444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 287/437 (66%), Gaps = 20/437 (5%) Strand=Plus/Plus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| ||||||||||| || | ||| || || | | ||| || | | |||| ||| Sbjct 13294 AACCTGTACCAATACCCTCTGCACCATTGACAAGCAGCATTGGAATGATAGGCACGTAGT 13353 Query 167417 AGTCGGGTTCAAT--GGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTT- 167473 | ||||||||| |||| ||||||||| || |||| | | |||||| |||| Sbjct 13354 ATACGGGTTCAACCGGGAA--ACCATCATCGTCGGCGTAGGCCAACAGGGCATCGTCTTC 13411 Query 167474 -TGGGATCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGA 167532 | || ||| | | |||| | ||| |||| ||| || || || | | | Sbjct 13412 TTCGGG--GAATACCAGGCGAGTGTGCTTTTGAAGCAACGTGAAAATATAACGAGGACTA 13469 Query 167533 GACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTG 167592 | |||||||| ||||| || ||||||||||| ||||| |||| | || || | Sbjct 13470 GCGGCATCCTTACCACCTTGCAGCCGTGTACCAAACTGACCGGATGGATACAGCAGTGGG 13529 Query 167593 ATGTTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT----TTCAGCGAGGGA 167648 | || || || ||| | | || | ||||| || || ||||| | |||||| | Sbjct 13530 AGATTGTTGGAGCCCACAAAGTCCTGGGCCATATTAACAATCGTCGAGTGCAGCGATG-- 13587 Query 167649 AACTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACA-TATGCTGCCAACTGTGCAACCT 167707 |||| |||||||||||||| | | ||| || ||| || | |||| ||||| |||| Sbjct 13588 --CTTCACCGTGGTGGTAAGCTGTGTGTTC-GCTACAGTAACCAGCCAGTTGTGCCACCT 13644 Query 167708 TCATCTC-ATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGT 167766 ||| ||| || || || || | || || | | | | |||||| || || ||| | Sbjct 13645 TCACCTCGCTCGTT-AGTTTGCGCTTCAAGCAAGCAAAAAGAACCTTACGCTGGGAAATT 13703 Query 167767 TTGAGACCATCTGCCAC 167783 || ||||| || |||| Sbjct 13704 TTCAGACCGTCAACCAC 13720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588948840844200