Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq666 185 1e-41 seq141 136 5e-27 seq125 98.7 1e-15 seq1918 87.8 2e-12 >seq666 Length=16246 Score = 185 bits (204), Expect = 1e-41 Identities = 677/1040 (65%), Gaps = 35/1040 (3%) Strand=Plus/Plus Query 106278 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 106337 |||| || |||||||||||||| | ||| | || | ||| ||||| || ||||| |||| Sbjct 14396 CATCAGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCG 14455 Query 106338 CAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 106396 | ||| | || || || | || ||| || || ||| || || || || | | Sbjct 14456 CC-TCTACGACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACC 14514 Query 106397 TTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 106456 || || | ||||| | ||| || | || | ||| || || || || | Sbjct 14515 TTGGTTACTTCATACAACCTTTTGTAGTTGAACACACC-GTC-CTCCA----CAAACATC 14568 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || | || ||||||||||| |||||| |||||| | |||||||| | Sbjct 14569 GGCAGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATC 14628 Query 106517 ATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTT 106573 | ||| ||||||||| || | ||||| ||||| || | ||||| ||| Sbjct 14629 ACTTCACAGCACAAGTTGCTGGAGCGG---ATCGTGCCCAAGTTTTGCTGGTTCGACTTG 14685 Query 106574 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGA 106633 ||| || |||||||| |||||| | || |||||||| |||| | | || Sbjct 14686 CGGTTAGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGG 14745 Query 106634 ATTGCCTTCCACACATCGGCGGCTGGTACAATGG-CGT--TG---GCCCGTCCCTCCGCC 106687 || || ||||| | |||| | || || ||| || || ||||||||| | Sbjct 14746 ATGGCAAACCACAGTT-----GCTG-TGCATTGATCGTCTTGCGAGCACGTCCCTCCTTC 14799 Query 106688 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGC 106746 |||||||| |||||| | |||||||| |||||| | || ||| |||| || || || Sbjct 14800 TCGTACTTCTCGTAGAGCGTCTCAAACTCGTCACCC-CAGCACTCGTAGAGTCCAGGAGC 14858 Query 106747 CTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTC 106806 | | || ||||| | | ||| | ||| | || || ||||||||||| || || Sbjct 14859 TTCATTGGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATC 14918 Query 106807 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 106866 || | ||| |||| | || | || | |||| | |||| ||| ||||| Sbjct 14919 GGGGACCCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTCTT 14978 Query 106867 TCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 106926 || || || | |||||| | | ||| |||||||| ||||| || || | |||| ||| Sbjct 14979 GCGCAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGA 15038 Query 106927 TCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 106983 ||||| || || || | || | || ||||| || || ||||||| || || | Sbjct 15039 CCCCTTGCGTTTACCTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAA 15098 Query 106984 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTC 107042 ||| || || || |||| || || || || || || || || | || |||| | Sbjct 15099 CATGGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGT-AGCTGTTGGTGGCAC 15157 Query 107043 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 107102 | | || || || ||||| || ||||||||||| ||||| ||||||| | Sbjct 15158 GGATGTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCT 15217 Query 107103 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 107162 | || || | || || || | || ||||| |||| | || | | |||||| || Sbjct 15218 TCAGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGG 15277 Query 107163 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 107222 ||| || || | ||| || ||||| |||||||| || || || ||||| |||| | || Sbjct 15278 ACAATTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGA-AC 15336 Query 107223 CT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281 | |||||||| ||||| ||||||||| | | | ||||| | ||||||||| Sbjct 15337 TTCTGGGACATGAGCTCGTACGTCTCCAAGGCCGCCTTGATGTCGCTCTTGTGGATGCCT 15396 Query 107282 ATGGCCACACGCATAAACAT 107301 | ||||| ||||| | ||| Sbjct 15397 AGCGCCACGCGCATGATCAT 15416 >seq141 Length=36708 Score = 136 bits (150), Expect = 5e-27 Identities = 354/528 (67%), Gaps = 14/528 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 14929 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 14988 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||| | || ||| ||||| Sbjct 14989 CAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAGTA-GAGCAGACG 15047 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-AC 117163 || | ||| |||||||||||| | |||| | | |||||||| |||||||| | || Sbjct 15048 GTCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCGATGAGCTCGAC 15107 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | ||||| | ||| | |||| | | ||| ||| | || || || |||||| ||| Sbjct 15108 A-GGGAGCGAGTCGCGCACGAACTCGTGCTCGATCACCACAGCGTCACGCACGATCTCGT 15166 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | ||| || || | | || | | | ||| || ||| || Sbjct 15167 GCACGCGGCTCTCCGGCAGCTTGTTGACCA-GCTTGGAGTACATGAGG--CA-GGCGAAG 15222 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | ||||| || ||| || || || || ||||||| ||| || |||||| Sbjct 15223 TCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCATG 15282 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 ||||| |||||||| | ||| | || | |||||| || || |||||||||||||||||| Sbjct 15283 AGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCTCC 15342 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGAC-TTTGTGTCAAACCATTT 117458 || ||||| || | || || || | | |||| ||| || | ||| |||| || Sbjct 15343 ACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGA-CGACACGCGCGGGTCGCACCACTT 15401 Query 117459 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | ||||| || || ||||||| | ||| || | ||| | ||||| Sbjct 15402 GAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCTCAATGGC 15449 >seq125 Length=38444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 169341 GCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCA 169400 |||||||| ||||| | || ||||| ||||| || ||||| || |||||||||||| Sbjct 14388 GCGTCGCGCACATTGAGAAGTTTACCACGAAGAGGGAAAACGCCGTACTGATCACGTCCA 14447 Query 169401 ACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGG 169460 || || | ||||| || || || || | ||| ||||||||||| ||||| | ||| || Sbjct 14448 ACAACAGCAAGACCAGCCACTGCCAGTGCTTTGGCTGAATCACCTTCCGTCAAAATAAGT 14507 Query 169461 GTACACTTTCCAGA 169474 | ||||| ||||| Sbjct 14508 GAACACTCACCAGA 14521 >seq1918 Length=12940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 8527 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 8468 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 8467 CCGGTAGGAGCTT 8455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589953594510360