Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq706 91.5 1e-12 >seq706 Length=15625 Score = 91.5 bits (100), Expect = 1e-12 Identities = 353/543 (65%), Gaps = 14/543 (3%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || ||| |||||||| || |||||||||| || || Sbjct 13235 GGTATTGATCTCGGCACGACGTATTCGTGTGTTGGGGTGTGGCAAAATGACCGCGTGGAG 13294 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || || ||| | || || ||||| || || | ||||| || | Sbjct 13295 ATCATTGCCAATGACCAGGGCAACCGTACGACACCATCGTACGTAGCCTTCACCGAGTCG 13354 Query 550118 GAAC-ATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAATAC 550173 |||| | ||| | || |||||||| || | ||| |||| || || | ||| || Sbjct 13355 GAACGACTTA-TCGGCGATGCAGCGAAGAACCAAGTGGCCA-TG--AACGCGCACAACAC 13410 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 | | ||||||| |||||||| || || | | || | ||| | || ||| | || Sbjct 13411 TGTGTTTGATGTCAAACGTTTGATCGGCCGCAAGTTCACGGATACTGAAGTGCAGTCGGA 13470 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC--TGGAAAACCTTATATTGAAGCT 550291 ||| ||||| ||||| ||| || | | | | | ||| || | | | | | Sbjct 13471 TATCAAGCACTGGCCGTTCAAAGTGGCGCGCGGTCCCGAGGACAAGCCGCAAGTCGTGGT 13530 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | |||| | || | || || || || | || || || ||||| | || Sbjct 13531 GCAGTTCAAGGGCGAATCGAAGACGTTCCAGCCCGAGGAGATATCGTCCATGGTGCTGAT 13590 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGCAGTAATAA 550409 || ||| | | | ||| | || | | |||| |||| | | |||| || | | Sbjct 13591 CAAGATGCGCGAGATTG-CAGAGGCATTCATCGGCAAGCAAGTGAAGAATGCGGTGGTGA 13649 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || ||||| |||||||| || || ||||| || || ||||| ||| |||| Sbjct 13650 CGGTGCCGGCGTATTTCAATGACTCGCAGCGCCAAGCGACCAAGGATGCCGGAGTCATTG 13709 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| | || || || ||||| || || || || || |||||||| |||| || || | Sbjct 13710 CTGGTTTGAACGTGCTGCGTATCATTAACGAGCCGACCGCTGCTGCTATTGCCTACGG-C 13768 Query 550530 TTG 550532 ||| Sbjct 13769 TTG 13771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029100909042610