Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq141 264 2e-65 seq666 246 6e-60 >seq141 Length=36708 Score = 264 bits (292), Expect = 2e-65 Identities = 568/843 (67%), Gaps = 21/843 (2%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| || |||||| | ||||| Sbjct 14928 GTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 14987 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| ||| || | | | || |||| | | ||||| | Sbjct 14988 CCAGTCGAACGGGTTCTTGACGTTGTAGATCTTGGACACTCCCAGCGAGTAGAGCAGACG 15047 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG--GAC 48019 || || ||| |||| ||||| | ||||||| ||||||||| ||||| ||| Sbjct 15048 GTCAGCCACGAACTCAATGTACTGGCACATGAGCCCCGAGTTCATGCCGATGAGCTCGAC 15107 Query 48020 ACGGGCAAAGCCTTTGTG-AGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 | || || | | | | ||||| | ||| ||| ||| || || | ||| |||| Sbjct 15108 AGGGAGCGAGTC---GCGCACGAACTCGTGCTCGATCACCACAGCGTCACGCACGATCTC 15164 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 | |||||| ||| | | |||||| ||| ||||| || | | |||||| || Sbjct 15165 GTGCACGCGGCTCTCCGGCAGCTTGTTGACCAG---CTTGGAGTACATGAGGCAGGCGAA 15221 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 |||| |||||| ||| ||||| |||||||||||| |||| ||||||| ||||||||||| Sbjct 15222 GTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGAAGCTTAGACCAGGCAT 15281 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | || ||||||||||| || | ||| ||||| ||||||||||| ||||| Sbjct 15282 GAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATACCCTC 15341 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG---CGTTCTTGTCTGAGATCCA 48315 |||||| || || || |||| || | | || | || | ||| | ||| Sbjct 15342 CACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACACGCGCGGGTC---GCACCA 15398 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 |||||||||| || ||||||| || || || || ||||| ||||| || | || Sbjct 15399 CTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCTCAATGGCACGCAGCAG 15458 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTC 48432 | | ||| | |||| | || || | | |||||| | ||||| ||| Sbjct 15459 GTGGGTTTTCTCGACAATGTCCTTGATGTACGTGTCAATAAGCAGC---GAGTACACCTC 15515 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| ||||||||| | |||||| ||| || Sbjct 15516 CGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGCACTTG 15575 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || || ||| || || ||||| |||||||| ||||| |||||||| Sbjct 15576 CACCTCGTTGCTGAAGTTCATGGCCAAGTTCTCGTTGACTATACCATCACTGGCAGCAAA 15635 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| || || || || | ||| ||||||||||||| ||||| |||| ||| Sbjct 15636 GAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAGGTTCACCCAGTCCTT 15695 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 | ||| | | || |||| || || | ||||||||||| || || || ||||| Sbjct 15696 GAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTA 15755 Query 48673 CAT 48675 ||| Sbjct 15756 CAT 15758 >seq666 Length=16246 Score = 246 bits (272), Expect = 6e-60 Identities = 1137/1773 (64%), Gaps = 77/1773 (4%) Strand=Plus/Plus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||| ||||| || ||||| |||| ||| | |||||| | ||||| || Sbjct 13711 TAGTACATGCCCGTCTTGAGTCCCTTCTTCCAGGCGTAGAAGTGCATGGACGTGAGCTT- 13769 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| | | || |||| ||| ||||| | ||| || |||||||||| Sbjct 13770 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 13813 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGA-TATCTCTCTGGGAGAGCTCC 212771 || ||| | | | | | ||| || | || ||| | | | || |||| || |||| Sbjct 13814 GGCAAATGTAGGCGCCACGGTCGGCCGACAGGTCCAGCACTGACT-TCTGCTTGATCTCC 13872 Query 212772 CACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGAC 212831 ||||| |||||| | | || |||| || || |||| | | | |||||||| || Sbjct 13873 CACACCGTCTTGTACTTCTCCTTGACGTTGTCCGGGATGGCCTTCACCTTCTGCACGGAA 13932 Query 212832 CCCCTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGTTCCAGAGGCCC--CTGGTCT 212886 || | || | |||| ||| ||| | || |||||| |||| || | Sbjct 13933 CCACCGTC---GTTCAGAATCTGATTGCGAACTTCAGGCGTCCAGATGCCCAACTCGAT- 13988 Query 212887 CCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCT 212946 ||| ||| | ||||| ||| || ||| ||| || || | ||||| | | | Sbjct 13989 -CAGCTCCTTCATCAGGTACTTGTTAACGATCGTGAACTCGCCAGCAAGCACACGACGGT 14047 Query 212947 GGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGC 213006 ||| | ||| || |||||||||||||| ||||||||| |||| ||||| ||||| Sbjct 14048 TGTACATGTTGGACGTGTAGGGCTCGATAGACTCGTTGTTGCCCAAGATCTGAGCAGTAG 14107 Query 213007 TGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGC 213066 || || |||||||| |||||||| || ||| | | ||||||| | | | | Sbjct 14108 AAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCAC-ATTC 14166 Query 213067 GCCGA-AGCTCTGCCCAGTCCCATCTGCCAGAC--AGGTCCTCGTCCTTCACGTTCCACA 213123 || ||| | ||||| ||||| || ||| ||| | || ||||| Sbjct 14167 TCCTTCAGCGCAGCCCAATCCCAAAGTCCGGACGAAGGAG--------TGACACCCCACA 14218 Query 213124 TGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCAT 213183 |||| ||||| || | || ||||| | || ||||||| ||| ||||||||| Sbjct 14219 TGTCGAACTGGAAAACACCCTTGCTGGCCGGCGAGCCCTGGAAAGTCTCGTAGGGGCCCA 14278 Query 213184 GCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCT 213243 ||||||||| | ||| |||| || || | |||||||||||| || || || || | Sbjct 14279 ACTCCTTGGCAATCTCCATCGACGTCTCCATAGAAGCGTAGTAGATCGTCTCGAAGATGT 14338 Query 213244 CCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCAT-CATGCGTTGGAACACA 213302 | |||| | || |||| | | | || || | | ||| | |||| || Sbjct 14339 TCTTGTTCAACTCACGTGCCTGCTCGCTC-TCAAACGCGTAGTTCATAAGGATGAACGCA 14397 Query 213303 TCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCA 213361 |||||||| || || || || || || | ||| | ||| | || ||| |||||| | || Sbjct 14398 TCAGCCAGACCTTGAACACCAATACCCACGGGACGGTGGCGCATGTTCGACTTGCGCGC- 14456 Query 213362 CTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTT 213421 ||| | | ||||| ||||| |||||| | |||||| |||||||| || |||| || Sbjct 14457 CTCTACGACCGGGTAGTAGTTGACGTCGATCACCTTGTTCAGGTTGCGCGTCACCACCTT 14516 Query 213422 GGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGG 213481 ||| || | || | || |||||||| ||||||| ||||||| || Sbjct 14517 GGTTACTTCATACAACCTTTTGTAGTTGAACACA------CCGTCCTCCACAAACATCGG 14570 Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGAT 213541 ||| || | |||| ||||| || |||||||| | || ||||||||||| | Sbjct 14571 CAGTGCCACCGACGCCAAATTGCACACAGCCACCTCATCAGGAGAAGTGTACTCCATCAC 14630 Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTT 213601 || ||||| ||||||| | ||||| ||||||| ||| || ||||| ||||| ||| Sbjct 14631 TTCACAGCACAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTT 14690 Query 213602 GGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTG 213661 || | |||||||| |||||| | || || ||||| | ||| | | || | || Sbjct 14691 AGCTGCGTCCTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGA--TG 14748 Query 213662 GC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTAC 213719 || ||| || | | || |||| | | | || ||| | | ||||||| Sbjct 14749 GCAAACCACAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTT---CTCGTAC 14805 Query 213720 TGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA-CAGGATGC 213778 | ||||||||| | || |||| |||||| | || ||||| ||| | || Sbjct 14806 TTCTCGTAGAGCGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCAT-T 14864 Query 213779 GGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 ||| || | | ||||| | || | || || | || ||||||||| || ||||| Sbjct 14865 GGGGCAGAACAAACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGAC 14924 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCG 213895 ||| || ||| ||||| ||| | | || | ||||| || ||| ||||| Sbjct 14925 CCAAAGGGCGTAGAACAAGTCGCGCGCCCGATGCAACTCGT---TACCGTGGTTCTTGCG 14981 Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGC-AAAGGCGC 213954 || || | || ||||| | || |||||||| ||||||| ||| || || |||| | | Sbjct 14982 CAAGTCCAAGAACTCAAACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCC 15041 Query 213955 CCGGCCTCT--TGCCGCCCTGGTCCAC-CAGCCTGGCCACCAT-GTTGAAGATGCGCAGG 214010 | || | | |||||||||||||| ||| | || || ||| || | |||| Sbjct 15042 CTTGCGTTTACCTCCGCCCTGGTCCACGTAGC--GAGCAGTATCGTTAAACACCCGCAAC 15099 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | ||| | | || |||||| |||||||| || || || | || ||| | Sbjct 15100 ATGGGGATGATGCCATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGG 15159 Query 214071 AGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC 214130 | |||| ||| | || || || || || |||||||||| ||| || || || Sbjct 15160 ATGTTGTGCATACTAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTC 15219 Query 214131 ACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAG 214190 | || || ||||| | || ||| || | |||||||||||| || Sbjct 15220 AGTGTGTCGTAAATGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGAC 15279 Query 214191 AGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG 214250 | ||||| | | || ||||| |||||| |||||||| |||| || | | ||||| Sbjct 15280 AATTGGGGACGTGGCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTC 15339 Query 214251 TTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGA 214310 | || | |||| ||| ||||||| | | | ||||||| ||||||||| ||| Sbjct 15340 TGGGACATGAGCTCGTACGTCTCCAAGGCCGCCTTGATGTCGCTCTTGTGGATGCCTAGC 15399 Query 214311 GCGCAC-CTCATCAGCATGTGCTGGGGCCTCTC 214342 || ||| | ||| | ||| ||||| |||| ||| Sbjct 15400 GC-CACGCGCATGATCATCTGCTGCGGCCGCTC 15431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931489844693760