Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq666 172 7e-38 seq141 136 5e-27 seq99 118 1e-21 >seq666 Length=16246 Score = 172 bits (190), Expect = 7e-38 Identities = 719/1114 (65%), Gaps = 33/1114 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205 ||||| || ||||||| | |||| | |||| ||| || | | |||| | || Sbjct 15491 TACTTCGGCTTCAAAACATTAGAGAGGGGCTACCTTTTCCGCGTGAACGGCAAAGTGGTG 15432 Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265 || || ||| | ||| ||||||| || || | ||||||||| | ||||| | Sbjct 15431 GAGCGGCCGCAGCAGATGATCATGCGCGTGGCGCTAGGCATCCACAAGAGCGACATCAAG 15372 Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 75324 | | ||||||||| ||||| |||||||| | || | |||| ||||| || || || Sbjct 15371 GCGGCCTTGGAGACGTACGAGCTCATGTCCCAGAAGT-TCTTCACGCACGCCACGCCCAC 15313 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 |||||||| ||||| || ||| | || || ||||| |||||| | | || | | Sbjct 15312 GCTCTTCAACGCTGGCACGCCACGTCCCCAATTGTCCTCGTGCTTCTTGCTGGCTATGCA 15253 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 ||| ||||| || | || || || | || || | | ||||||| ||||| ||||| Sbjct 15252 GGACGACTCGATTGAGGGCATTTACGACACACTGAAGCAGTGTGCCTGCATCTCCAAGTG 15193 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGG 75503 |||||| || ||||| || || || | | | |||| || | || || || | Sbjct 15192 GGCTGGAGGAATTGGCATTAGTATGCACAACATCCGTGCCACCAACAGCT-ACATCCGAG 15134 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || |||| || || || ||| | || || ||||||| || || | Sbjct 15133 GCACCAACGGCTCGTCCAATGGCATCATCCCCATGTTGCGGGTGTTTAACGATACTGCTC 15074 Query 75564 GCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || | || || ||||||||||| |||| | ||| |||| || | Sbjct 15073 GCTACGTGGACCAGGGCGGAGGTAAACGCAAGGGGTCTTTCGCTATTTACCTGGAGCCTT 15014 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| || ||| | | |||||| | || || || ||||| ||| |||| | || Sbjct 15013 GGCACGCAGATGTGTTTGAGTTCTTGGACTTGCGCAAGAACCACGGTAACGAGTTGCATC 14954 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 || | || | || | |||| ||| | || || || ||||||||||| || || | Sbjct 14953 GGGCGCGCGACTTGTTCTACGCCCTTTGGGTCCCCGATCTGTTCATGAAGCGTGTGGAAG 14894 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTG 75799 ||| | ||| | | ||||| || | | || || || |||| ||| || | | Sbjct 14893 CCAATGGCAAGTGGAGTTTGTTCTGCCCCAATGAAGCTCCTGGACTCTACGAGTGCTG-G 14835 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCG 75856 ||||| |||||||| | |||||| ||||| || ||||||| | || ||| || Sbjct 14834 GGTGACGAGTTTGAGACGCTCTACGAGAAGTACGAGAAGGAGGGACGTGCTCGCAAGACG 14775 Query 75857 A-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 | | | | |||| | | |||| || || || | | |||| ||||| || Sbjct 14774 ATCAATGCACAGCAACTGTGGTTT-----GCCATCCTTGACGCGCAGATTGAGACGGGTG 14720 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 |||| ||||| |||||||| || |||| ||| ||||| | || ||||| | Sbjct 14719 TTCCATTCATGCTGTACAAGGACGCAGCTAACCGCAAGTCGAACCAGCAAAACTTGGGCA 14660 Query 75975 CAATCAAGAGCTCAA--ATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 | ||| |||| | | ||| ||| ||| | | |||||||| | |||||| Sbjct 14659 CGATC---CGCTCCAGCAACTTGTGCTGTGAAGTGATGGAGTACACTTCTCCTGATGAGG 14603 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCA 76091 |||||| ||||||||||| || | || || || | || || || || ||| | Sbjct 14602 TGGCTGTGTGCAATTTGGCGTCGGTGGCACTGCCGATGTTTG----TGGAG-GAC-GGTG 14549 Query 76092 CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAG 76151 || | || ||| | ||||| | || ||| | || || || || ||| | Sbjct 14548 TGTTCAACTACAAAAGGTTGTATGAAGTAACCAAGGTGGTGACGCGCAACCTGAACAAGG 14489 Query 76152 TCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 | || ||| || | || || || | ||| ||||| ||||| || ||||| ||| | Sbjct 14488 TGATCGACGTCAACTACTACCCGGTCGTAGA-GGCGCGCAAGTCGAACATGCGCCACCGT 14430 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATG 76244 || | ||| | |||||||||||||| || |||| Sbjct 14429 CCCGTGGGTATTGGTGTTCAAGGTCTGGCTGATG 14396 >seq141 Length=36708 Score = 136 bits (150), Expect = 5e-27 Identities = 354/528 (67%), Gaps = 14/528 (3%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 ||||| | ||| | || ||| | ||||||| || || ||||| | || |||| ||| Sbjct 15449 GCCATTGAGACTATCCCGTGTGTCCAGAAGAAAGCCAACTGGGCGCTCAAGTGGTGCGAC 15390 Query 65056 ACAAA-GTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | || ||| |||| | | || || || | || ||||| |||||||||||||| Sbjct 15389 CCGCGCGTGTCG-TCCTACCCGGAACGGCTGCTGGCCTTTGCTGCAGTGGAGGGTATCTT 15331 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| | || | ||| | |||||||| ||||||||||| || || Sbjct 15330 CTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCT 15271 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA 65234 | ||||||| || || || || ||| || ||||| | ||| ||| || ||| || Sbjct 15270 AAGCTTCTCGAACGAGCTCATCAGCCGTGACGAGGGCATGCACACGGACTTCGCC-TG-- 15214 Query 65235 GCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGA 65290 ||| | | | || | | || || ||| | | |||| |||||| Sbjct 15213 CCTCATGTACTCCAAGC-TGGTCAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGC 15155 Query 65291 AAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATC 65349 || || || | ||| ||| | | |||| | ||| | ||||| ||| | |||||| Sbjct 15154 GTGACGCTGTGGTGATCGAGCACGAGTTCGTGCGCGACTCGCTCCC-TGTCGAGCTCATC 15096 Query 65350 GGTATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAA 65409 || |||||||| | | |||| | |||||||||||| ||| | || ||||| ||| | Sbjct 15095 GGCATGAACTCGGGGCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCTC-TA 15037 Query 65410 CAAGTTGGG-GTGCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACAT 65468 | | |||| ||| | || | |||| ||||| || || |||| ||||| | || Sbjct 15036 CTCGCTGGGAGTGTCCAAGATCTACAACGTCAAGAACCCGTTCGACTGGATGGACATGAT 14977 Query 65469 TAGCCTTGATGGGAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 || | || |||||||||||||| |||||||| || || || || Sbjct 14976 CTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 14929 >seq99 Length=40689 Score = 118 bits (130), Expect = 1e-21 Identities = 284/422 (67%), Gaps = 17/422 (4%) Strand=Plus/Minus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 |||||||||||||||| || || || |||| || || ||||| || ||||| || Sbjct 35680 TGGTGCCAAGATCCCCAAGGGTGCGCTACTCGTTGGCCCCCCCGGTACAGGTAAGACGCT 35621 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCA 175392 || ||| |||| || ||||| | | || |||||| || || | |||| | Sbjct 35620 GCTGGCCAAGGCCACGGCTGGTGAGGCTAGCGTTCCATTCTTCAGCATT--TCTGGTTCG 35563 Query 175393 AACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATC 175452 |||| | |||||||| |||||||||||| | | || || ||||||||| | Sbjct 35562 GACTTCATCGAGATGTTCGTTGGTGTGGGTCCGTCCCGTGTGCGTGATCTCTTTAAGGAG 35503 Query 175453 GCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGC-A 175511 || || | || || || ||||| ||||||||||| || ||||| || |||| || Sbjct 35502 GCTCGTGCGAACGCTCCGTGCATTGTGTTCATTGATGAAATCGATGCTGT-GGCACGCGC 35444 Query 175512 ACGCAGC----GCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAAC 175567 ||| ||| || | | | | || || |||||| | ||| | ||| |||| || | Sbjct 35443 ACGAAGCAAGGGCAACTTCTCGGGCGGC-AACGACGAGCGTGAAAACACACTTAACCAGC 35385 Query 175568 TACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTGGTTATTGCGGCCA 175624 | || |||||||||||| || || | |||| || | ||||| |||| | | Sbjct 35384 TTCTGGTCGAGATGGATGGTTTCAACTCAAGTGAG---GGTGTGGTGGTGCTTGCTGGTA 35328 Query 175625 CTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCAAGA 175684 | || |||| |||||| ||||| | || |||| || || ||||| || ||||| ||| Sbjct 35327 CGAACCGCGCGGATATTCTTGACAAGGCTATCCTGCGTCCCGGTCGATTCGATCGGCAGA 35268 Query 175685 TC 175686 || Sbjct 35267 TC 35266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596542090684320