Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq911 86.0 5e-12 seq1010 82.4 6e-11 >seq911 Length=12855 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | |||||||| || || || | || |||||| Sbjct 12280 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 12339 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | ||| | | || || ||||| ||| ||||| |||||| | ||| || || Sbjct 12340 GACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 12399 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | | || || || |||||| Sbjct 12400 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 12459 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || || || || ||||| |||||| ||||| | | ||||| || ||||| Sbjct 12460 ATCCAGAAGGAGTCTACTTTGCACCTGGTGCTTCGTCTGCGCGGCGGAAA 12509 >seq1010 Length=11520 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | |||||||| || || || | || |||||| Sbjct 57 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 116 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | ||| | | || || ||||||||| ||||| |||||| | ||| || || Sbjct 117 GACTCGATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 176 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | | || || || |||||| Sbjct 177 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 236 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || || || || || ||| ||||| ||||| | | ||||| || ||||| Sbjct 237 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGAAA 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412823038770677