Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1010 87.8 1e-12 seq911 86.0 5e-12 seq414 82.4 6e-11 >seq1010 Length=11520 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 107623 TCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGAC 107682 ||| | | || || || |||||| || || |||||| | ||| || |||||| | | Sbjct 124 TCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAGCGCC 183 Query 107683 TTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAA 107742 | || | || || || ||||||||||||| | || || ||||||||||| || | Sbjct 184 TGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGA 243 Query 107743 AGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 ||||||| ||| ||||| ||||| || | |||| || ||||| Sbjct 244 AGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGAAA 286 >seq911 Length=12855 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| ||||| || | || ||||| || || || | || |||| | Sbjct 11821 AAGATGCAGATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCG 11880 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | ||| | | || || || || ||| || || |||||| | ||| || Sbjct 11881 TCGGACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGAC 11940 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||||||||||| | || || |||||| Sbjct 11941 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTAC 12000 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| ||| ||||| ||||| || | |||| || || Sbjct 12001 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 12050 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || || || | || |||| | Sbjct 12280 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 12339 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | | || || || || ||| || || |||||| | ||| || ||| Sbjct 12340 GACTCGATCGACAACGTCAAGCAGAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 12399 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||||||||||| | || || ||||||||| Sbjct 12400 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAAC 12459 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 || || ||||||||||| |||||| ||||| | | |||| || ||||| Sbjct 12460 ATCCAGAAGGAGTCTACTTTGCACCTGGTGCTTCGTCTGCGCGGCGGAAA 12509 >seq414 Length=22499 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 107623 TCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGAC 107682 ||| | | || || || |||||| || || |||||| | ||| || |||||| | | Sbjct 160 TCGACAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAGCGCC 101 Query 107683 TTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAA 107742 | || | || || || ||||||||||||| | || || ||||||||||| || | Sbjct 100 TGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAACATCCAGA 41 Query 107743 AGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||| ||| ||||| ||||| || | |||| || || Sbjct 40 AGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398858866623721