Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq666 147 2e-30 seq911 104 2e-17 seq1010 95.1 1e-14 seq414 93.3 4e-14 seq688 82.4 7e-11 >seq666 Length=16246 Score = 147 bits (162), Expect = 2e-30 Identities = 599/934 (64%), Gaps = 19/934 (2%) Strand=Plus/Plus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 ||||||| |||||| || ||| ||| || || | | |||||| || | ||| ||| Sbjct 14581 GACGCCAAATTGCACACAGCCACCTCATCAGGAGAAG-TGTACTCCATCACTTCACAGCA 14639 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || ||||||| | || ||||| |||||||| || || || || ||||| Sbjct 14640 CAAGTTGCTGGAGCGGATCGTGCCCAAGTTTTGCTGGTTCGACTTGCGGTTAGCTGCGTC 14699 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATG 147641 ||| | |||||| | || | || ||||| | |||| |||| ||| ||||| Sbjct 14700 CTTGTACAGCATGAATGGAACACCCGTCTCAATCTGCGCGTCAAGGATGGCAAACCA--- 14756 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 ||| | ||| || | | || ||| || ||||| || |||||| |||||| | Sbjct 14757 CAGTTGCTGTGCATTGATCGTCTTGCGAGCACGTCCCTCCTTCTCGTACTTCTCGTAGAG 14816 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 | |||||||||||| || |||| ||| || || ||| | || || || | || Sbjct 14817 CGTCTCAAACTCGTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTGGGGCAGAACAA 14876 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 |||| || | | || | || || ||| |||||||| || ||||| || ||||| Sbjct 14877 ACTCCACTTGCCATTGGCTTCCACACGCTTCATGAACAGATCGGGGACCCAAAGGGCGTA 14936 Query 147822 CATAAGATCGCGCGCTT--TGCAA-TCCTCGGCGCCCATGTTGCGTTTCAAATT-AAGCA 147877 | | |||||||| ||||| || | || | ||||| ||| | ||| | Sbjct 14937 GAACAAGTCGCGCGCCCGATGCAACTCGTTACCGTGGTTCTTGCG---CAAGTCCAAGAA 14993 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT-- 147935 | | | | | || |||||||| || || | ||| | || | | || || || || Sbjct 14994 CTCAA-ACACATCTGCGTGCCAAGGCTCCAGGTAAATAGCGAAAGACCCCTTGCGTTTAC 15052 Query 147936 -TCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 |||||||||||| || | ||| | | | ||||||||| |||| |||||| | || Sbjct 15053 CTCCGCCCTGGTCCACGTAGCGAGCAGTATCGTTAAACACCCGCAACATGGGGATGATGC 15112 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 | | | | |||||||||| ||| | |||| | ||| || | | ||||| Sbjct 15113 CATTGGACGAGCCGTTGGTGCCTCGGATGTAGCTGTTGGTGGCACGGATGTTGTGCATAC 15172 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGA 148114 ||| |||||| || || | |||| || ||| || || | || ||| ||| | Sbjct 15173 TAATGCCAATTCCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAGTGTGTCGTAAA 15232 Query 148115 TGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCC 148174 |||| || || ||||| | | | ||||| || ||||| ||| ||| ||| Sbjct 15233 TGCCCTCAATCGAGTCGTCCTGCATAGCCAGCAAGAAGCACGAGGACAATTGGGGACGTG 15292 Query 148175 GCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGC 148234 |||| || || ||| || ||||| | |||||||| || || || || ||| | Sbjct 15293 GCGTGCCAGCGTTGAAGAGCGTGGGCGTGGCGTGCGTGAAGAACTTCTGGGACATGAGCT 15352 Query 148235 GATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGA 148294 |||||||| | || | | ||||||| ||| ||||| ||||| |||||||||| Sbjct 15353 CGTACGTCTCCAAGGCCGCCTTGATGTCGCTCTTGTGGATGCCTAGCGCCACGCGCATGA 15412 Query 148295 GCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGA 148354 ||| ||||| || || || | |||| ||| | || ||| || || | || | Sbjct 15413 TCATCTGCTGCGGCCGCTCCACCACTTTGCCGTTCACGCGGAAAAGGTAGCCCCTCTCTA 15472 Query 148355 GGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 |||||| | || ||||| | ||| || || || Sbjct 15473 ATGTTTTGAAGCCGAAGTAGTCGTACTCGAAGTC 15506 >seq911 Length=12855 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 12045 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 11986 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 11985 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCC 11926 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || || | | || | | || | ||||||||| || | Sbjct 11925 TTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 11866 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || ||||| || || | |||||||||||| Sbjct 11865 CGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCAT 11824 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 12273 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 12214 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 12213 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCC 12154 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| || || | | || | | || | ||||||||| || | Sbjct 12153 TTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 12094 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || ||||| || || | ||| ||||||||| Sbjct 12093 CGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 12051 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || |||| Sbjct 12473 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 12414 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || |||||| || || | Sbjct 12413 AAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACG 12354 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 12353 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTG 12294 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 12293 ACGAAGATCTGCATG 12279 >seq1010 Length=11520 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || |||| Sbjct 250 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 191 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || ||| || || || | Sbjct 190 AAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACG 131 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 130 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTC 71 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 70 ACGAAGATCTGCATG 56 >seq414 Length=22499 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||||||| || || || || ||||| || |||| Sbjct 34 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 93 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || ||| || || || | Sbjct 94 AAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACG 153 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 154 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTC 213 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 214 ACGAAGATCTGCAT 227 >seq688 Length=17951 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 || || ||||||||||| || || || || |||||||| || |||| |||| Sbjct 3732 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3673 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 |||||||| || || || || |||||||| || || ||||| || || | | || Sbjct 3672 AGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTGTCA 3613 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | | |||| ||||||||| || | ||| | || || || ||||| || || | || Sbjct 3612 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 3553 Query 132116 ATCTGCATGA 132125 |||||||||| Sbjct 3552 ATCTGCATGA 3543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476589222266040