Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq141 322 7e-82 seq78 170 3e-36 seq666 168 1e-35 seq56 163 4e-34 seq1085 159 5e-33 seq235 102 1e-15 seq965 96.9 5e-14 seq2331 89.7 7e-12 >seq141 Length=36708 Score = 322 bits (356), Expect = 7e-82 Identities = 437/600 (73%), Gaps = 12/600 (2%) Strand=Plus/Minus Query 1455714 GCGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGC 1455773 |||||||| | || || ||||| |||||||| || || |||||||| | | || Sbjct 15829 GCGAGCCGTTCCTCGTGGAGAACCCCAACCGCTTCGTGCTCTTCCCCATTCAGGAGCACG 15770 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 | ||| | |||||| || ||||||||||| ||||| ||||| ||||||||| | || Sbjct 15769 ACGTGTGGCAGATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACGGCCGAGGAGCTGGAT 15711 Query 1455834 CTCGGCGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 |||| |||| | || |||||||| || | ||| |||||||||| |||||| Sbjct 15710 CTCGTGCACGACCTCAAGG---ACTGGGTGAACCTCACGGACAACGAGCGCCACTTCATC 15654 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 |||||||| || ||||| ||| || ||||| ||||| || || ||||||| ||||| Sbjct 15653 AAGCACGTGCTGGCCTTCTTT-GCTGCCAGTGATGGTATAGTCAACGAGAACTTGGCCAT 15595 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||| | || ||||| ||| |||| ||||| || | || ||||| ||||||||||| Sbjct 15594 GAACTTCAGCAACGAGGTGCAAGTGCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCGC 15535 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||| ||||||||||| || |||||||| || || ||||| ||| |||||||| Sbjct 15534 CATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTTATTGACACGTACATCAAGGACAT 15475 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 |||||||| |||||| | || ||||| || || | |||| || ||| || || Sbjct 15474 TGTCGAGAAAACCCACCTGCTGCGTGCCATTGAGACTATCCCGTGTGTCCAGAAGAAAGC 15415 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 | |||||||| | |||||| | || | | | ||| | || | || ||||| | Sbjct 15414 CAACTGGGCGCTCAAGTGGTGCGAC-CCGCGCGTGTCGTC-CTACCCGGAACGGCTGCTG 15357 Query 1456191 GGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | |||||| || || ||||| ||||| ||||||||| |||||| ||||||| |||||| Sbjct 15356 GCCTTTGCTGCAGTGGAGGGTATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTC 15297 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||||| || |||||||| |||| | |||| ||||| | ||||| || ||||| Sbjct 15296 AAGAAGCGTGGTCTCATGCCTGGTC-TAAGCTTCTCGAACGAGCTCATCAGCCGTGACGA 15238 Score = 163 bits (180), Expect = 4e-34 Identities = 240/327 (73%), Gaps = 12/327 (4%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCG-ACCGAC 1456510 ||||| ||||| ||||| || | ||| | | ||| |||||||||| | || | | | Sbjct 15232 TGCACACGGACTTCGCCTGCCTCATGTACTCCAAGCTGGTCAACAAGCTGCCGGAGAGCC 15173 Query 1456511 GTGCCCAAGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 | | || | ||||| | ||| || || || | ||||||| | ||||| || |||| || Sbjct 15172 GCGTGCACG-AGATCGTGCGT-GACGCTGTGGTGATCGAGCACGAGTTCGTGCGCGACTC 15115 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 ||| || || | |||||||||||||||| | ||||||||||||||||||||| || Sbjct 15114 GCTCCCTGTCGAGCTCATCGGCATGAACTCGGG-GCTCATGTGCCAGTACATTGAGTTC- 15057 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCA--AC 1456687 || || ||||| |||||| |||| || | | ||| |||| ||| | | || Sbjct 15056 GTGGCTGACCGTCTGCTCTACTCGCTGGGA-GTGTCCAAGATCTACA--ACGTCAAGAAC 15000 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 |||||| |||||||| |||||||||| |||||||||||||||| |||||| || Sbjct 14999 CCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGT 14940 Query 1456748 GT-GGCGAGTACGCCAAGGCCGGCGTC 1456773 || ||||||||| ||||||| || ||| Sbjct 14939 GTGGGCGAGTACTCCAAGGCTGGTGTC 14913 >seq78 Length=43990 Score = 170 bits (188), Expect = 3e-36 Identities = 200/269 (74%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 724872 GGCCAGCGCAAGAAGAATTATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAG 724931 ||| || |||||||| | || ||||||||| ||| |||||||||||||| ||| Sbjct 18537 GGCAAGGGCAAGAAGCGTGTTGAGTCGTACTCGACCTACATCTACAAGGTGCTGCGTCAG 18478 Query 724932 GTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTT 724991 ||||||||| || || |||| | | | | | |||||||||||||||||||| Sbjct 18477 GTGCACCCCGAGAC-----GGGCATCAGCAAGCGCGGC-ATGTCGATCATGAACTCGTTC 18424 Query 724992 GTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAG 725051 |||||||||| |||| ||||||| | | |||||||| ||| |||||| ||||||| Sbjct 18423 ATCAACGACATCTTCGAGCGCATCGCCTCGGAGGCCGGCAAGCTGTCGCGCTACAACAAG 18364 Query 725052 CGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAA 725111 ||| | || |||||||||||||| ||||||||||| || | | ||| || Sbjct 18363 AAGTCGACGCTGTCCAGCCGCGAGATCCAGACGGCCGTGCGCCTCATGCTCCCCGGTGAG 18304 Query 725112 CTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||||| ||||||||| || |||||||| Sbjct 18303 CTGGCCAAGCACGCCGTGTCGGAGGGCAC 18275 >seq666 Length=16246 Score = 168 bits (186), Expect = 1e-35 Identities = 219/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || |||||| |||||| ||| |||| ||||| || |||||||||||||| || || Sbjct 15359 ACGTACGAGCTCATGTCCCAGAAGTTCTTCACGCACGCCACGCCCACGCTCTTCAACGCT 15300 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 |||||||| || || || || |||||||| || ||| ||| ||| ||| ||||| Sbjct 15299 GGCACGCCACGTCCCCAATTGTCCTCGTGCTTCTTGCTGGCTATGCAGGACGACTCGATT 15240 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 |||||||| || ||||| || |||||||| || |||||||||| ||| || || || Sbjct 15239 GAGGGCATTTACGACACACTGAAGCAGTGTGCCTGCATCTCCAAGTGGGCTGGAGGAATT 15180 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || || ||||| | || ||| | | |||| | |||||||||||| | Sbjct 15179 GGCATTAGTATGCACAACATCCGTGCCACCAACAGCTACATCCGAGGCACCAACGGCTCG 15120 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||| ||| | | |||||| | || || |||||||| || || |||||||| |||||| Sbjct 15119 TCCAATGGCATCATCCCCATGTTGCGGGTGTTTAACGATACTGCTCGCTACGTGGACCAG 15060 Query 260183 TGC 260185 || Sbjct 15059 GGC 15057 Score = 123 bits (136), Expect = 4e-22 Identities = 334/503 (66%), Gaps = 20/503 (4%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| || || ||||||||| |||| ||||| | |||||| ||||| | || | |||| Sbjct 14155 AGCACGGTCTTCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCTACTGCTCAGA 14096 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 || ||||||||| |||| | ||||| | |||| |||||| |||| || || |||| Sbjct 14095 TCTTGGGCAACAACGAGTCTATCGAGCCCTACACGTCCAACATGTACAACCGTCGTGTGC 14036 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 | | ||||| || || | || ||| ||||| | ||| || | | | ||| Sbjct 14035 TTGCTGGCGAGTTCACGATCGTTAACAAGTACCTGATGAAGGAGCTGATCGAGTTGGGCA 13976 Query 263093 TGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAG-GGCTCGGTGCAG--GGCT 263149 | |||||||| || ||||| | | | | | | || | || || |||||| || Sbjct 13975 TCTGGACGCCTGAAGTTCGCAATCAGATTCTGAACG-ACGGTGGTTCCGTGCAGAAGG-- 13919 Query 263150 TTGACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGC 263209 ||| | | | | ||| | | |||||| | |||||| ||||||||| | Sbjct 13918 -TGAAGGCCA-----TCCCGGACAACGTCAAGGAGAAGTACAAGACGGTGTGGGAGAT-- 13867 Query 263210 CCAACCGGGTGACCATT---GATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCC 263266 ||| | | | | | || || |||||||||| | |||| | |||||| | Sbjct 13866 -CAAGCAGAAGTCAGTGCTGGACCTGTCGGCCGACCGTGGCGCCTACATTTGCCAGAGTC 13808 Query 263267 AGTCGCTCAACCTGTACCTCGCCGACCCGA-CGGCCGAGAGCATCACGTCGATGCACGCC 263325 ||||||||||| | || |||||||||||| | | | ||| ||||||| |||||| | Sbjct 13807 AGTCGCTCAACATCCACATCGCCGACCCGACCATCAGCAAGC-TCACGTCCATGCACTTC 13749 Query 263326 TATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCC 263385 || || ||| || |||||||| ||||||||||| ||||| || || || Sbjct 13748 TACGCCTGGAAGAAGGGACTCAAGACGGGCATGTACTACATGCGCGGACGCCCGAAAGCT 13689 Query 263386 AACGCCATTCAATTCACCGTCGA 263408 ||||||| || ||||| || || Sbjct 13688 GACGCCATCCAGTTCACGGTGGA 13666 >seq56 Length=47915 Score = 163 bits (180), Expect = 4e-34 Identities = 184/245 (75%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| |||||||||||||| |||||||||||| || || || Sbjct 22232 TCGTACTCGACCTACATCTACAAGGTGCTGCGTCAGGTGCACCCCGAGAC-----GGGCA 22286 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || | | | | | |||||||||||||||||||| |||||||||| |||| |||||| Sbjct 22287 TCAGCAAGCGCGGC-ATGTCGATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATC 22345 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | | |||||||| ||| |||||| ||||||| ||| | || |||||| Sbjct 22346 GCCTCGGAGGCCGGCAAGCTGTCGCGCTACAACAAGAAGTCGACGCTGTCCAGCCGCGAG 22405 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||| ||||||||||| || | | ||| || ||||||| ||||||||| || ||| Sbjct 22406 ATCCAGACGGCCGTGCGCCTCATGCTCCCCGGTGAGCTGGCCAAGCACGCCGTGTCGGAG 22465 Query 725136 GGCAC 725140 ||||| Sbjct 22466 GGCAC 22470 >seq1085 Length=18951 Score = 159 bits (176), Expect = 5e-33 Identities = 314/462 (68%), Gaps = 2/462 (0%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAG 332932 |||||||| ||||| || || ||||| | || || || | | | | || |||||||| Sbjct 13350 AAGCGCAGAATGGCGCAGCGACTCTGGATGGGTTCAATAATCTTGGTGGAATTGTTGCAG 13409 Query 332933 GCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGG 332992 ||||| || ||||||||||| | | ||||| || || || ||||| || Sbjct 13410 GCCAGCGCGAACCGCGTCGTGGCCGAGAAGATCTCCATCGTGCGTCGTAGCGCCTGCTGA 13469 Query 332993 GCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGC 333052 ||||||| ||| | | |||| || ||||| ||||| | |||||||||||| || | ||| Sbjct 13470 GCCGCCGCCGTCATGGAGTCCGCTTCGTCCAGGATCACGATCTTGTGGCGTCCTGGGGGC 13529 Query 333053 AGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGC 333112 || ||| | | | ||| ||||| | |||| || ||| | |||||| Sbjct 13530 AGCGTCACCTTCTGCTGCGCGAACATCTTGATCTTGCTGCGGACAGTGTCGATGCCGCGG 13589 Query 333113 TCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGC 333172 ||||| ||||||||||| || ||||| |||| | ||| | ||| | || |||| Sbjct 13590 TCGTCGGACGCGTTGAGCTCCAGCACCGCCTGTTTCACGGAAGGACCAAGCAGTTCGCGT 13649 Query 333173 GCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGTTG 333232 ||||| ||| |||||| ||||| ||||| || || || || |||| ||| | || || Sbjct 13650 GCCAGACACAAGATGCTGGTGGTTTTGCCTGTTCCTGGGGGGCCCGACAGGATCAGATTC 13709 Query 333233 GGCATGTTG-CCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGAC 333291 | ||||||| ||| | || |||| ||||| || || | | || |||||| || Sbjct 13710 GTCATGTTGCCCGCCTGC-GCCATCGCCTGCAGACTCGCGATCGTGTCGCGGTTGCCCAC 13768 Query 333292 AATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGG 333333 | ||| | ||||| || |||||||| || | ||| || Sbjct 13769 CACGTCCGCCAGCACGCGCGGACGGTACTTCTCCACCCACGG 13810 >seq235 Length=29874 Score = 102 bits (112), Expect = 1e-15 Identities = 177/257 (69%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 2133408 ACCATGCTGGTC---TGCCTGGGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCC 2133464 |||| |||| || ||| | |||||||| |||||||||||| ||| || | || ||| Sbjct 12048 ACCACGCTGCTCGAGTGCATTGGCGAGGACCCGACGCGCGAGGGGCTCGTGAAGACGCCC 11989 Query 2133465 ATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCGGCCATCGCATGACCCTGGCCGAC 2133524 |||||| ||||||| ||| || || | ||| ||| | || || |||| | ||| Sbjct 11988 ATGCGCATGGCCAAAGCCTTGCTGTACAACACCAAGGGCTACGGCCAGAGCCTGACGGAC 11929 Query 2133525 GCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATT 2133584 | | || || | || || |||| ||||||||||| | || | ||||| Sbjct 11928 GTGCTGAACGAGGCAGTGTTCGAAGAGGACCACGACGAGATGGTCATCGTCAGAGATATC 11869 Query 2133585 GACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGC 2133644 ||| | | ||||||||||||||||||| || |||| || | || || | ||| | ||| Sbjct 11868 GACCTGTACTCCATGTGCGAGCACCACATGGTGCCGTTCACGGGTAAAGTGCACATTGGC 11809 Query 2133645 TACCTGCCCGCGGGCAA 2133661 ||| | ||| ||||| Sbjct 11808 TACATCCCCAACGGCAA 11792 >seq965 Length=12348 Score = 96.9 bits (106), Expect = 5e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 165753 GACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAG 165812 |||||||| | ||||||||| ||||||| || ||||||||| ||||| ||||||||||| Sbjct 7566 GACCTGGTGAGTTGGGGCGCCATCGGTGCTCGTACCACCGAGTGCCAGTTGCACCGCGAG 7625 Query 165813 ATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGC 165863 | || | ||| | |||||||||||||||| ||| |||| | |||| Sbjct 7626 CTTTGCTCTGGTCTGTCCATGCCCATTGGCTTCAAGAACGGCACGGGCGGC 7676 >seq2331 Length=3095 Score = 89.7 bits (98), Expect = 7e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 18143 ATGGCTTTTTGGGCGTCGTCGAATGGCTGCACAAACGCGGCACGGCAGGCTGCACCACCG 18202 ||||| | ||| ||| ||| ||||||| ||| ||| | | |||| ||||||||| | | Sbjct 796 ATGGCCATCTGGACGTTGTCAAATGGCTTCACGAACACCGAACGGAAGGCTGCACGTCTG 737 Query 18203 ATGCCATGGACGGTGCAGCCATTGCCGGGCACCTCCACGTCGTCCAGTGGCTTCACGTGC 18262 ||| |||||| || |||| || || ||| ||||||| ||||||||||| || Sbjct 736 CTGCAATGGACAAAGCTGCCAGGCATGGCCATCTCAACGTCGTGAAGTGGCTTCACAAGC 677 Query 18263 ATCGTAGCGAGGGCTGCAC 18281 | |||| ||||||||| || Sbjct 676 ACCGTACCGAGGGCTGTAC 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177455389169618