Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq911 149 6e-31 seq1010 140 3e-28 seq414 140 3e-28 seq688 125 7e-24 seq666 102 8e-17 >seq911 Length=12855 Score = 149 bits (164), Expect = 6e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 12041 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 11982 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || || || |||||||| Sbjct 11981 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCC 11922 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || ||||| ||| | | ||| |||| |||||||| || || Sbjct 11921 TTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTG 11862 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| | || || |||||||| ||||| ||| Sbjct 11861 ATCGTCTTGCCGGTCAGCGTCTTGACGAAAATCTGCATCTTG 11820 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 12269 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 12210 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || || || |||||||| Sbjct 12209 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCC 12150 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| || ||||| ||| | | ||| |||| |||||||| || || Sbjct 12149 TTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTG 12090 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 12089 ATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12052 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||| ||||| | || || ||||| || |||||||||||| Sbjct 12509 TTTCCGCCGCGCAGACGAAGCACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCG 12450 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||| |||||||| || || Sbjct 12449 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 12390 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || |||||||| || ||||| ||| | | ||| |||| ||| Sbjct 12389 GGAATGCCTTCCTTGTCCTGAATTTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCC 12330 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || ||||| | || || ||||| || ||||| Sbjct 12329 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCAT 12280 >seq1010 Length=11520 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| ||||| ||||| || ||||| || |||||||||||| Sbjct 286 TTTCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 227 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | ||| | ||| || ||||| ||||| || || |||| |||||||| || || Sbjct 226 CTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGG 167 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || ||||| || || ||||| ||| | | ||| |||| ||| Sbjct 166 GGAATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCC 107 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || ||||| | || || ||||| || ||||| Sbjct 106 ACGTCCAGCGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 57 >seq414 Length=22499 Score = 140 bits (154), Expect = 3e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||||| | ||| | Sbjct 10 AGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGG 69 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||| || || || |||||||| Sbjct 70 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCTTCC 129 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || ||||| ||| | | ||| |||| |||||||| || || Sbjct 130 TTGTCCTGAATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTG 189 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || || || ||||| | || || ||||| || ||||| ||| || Sbjct 190 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATCTTGCTT 234 >seq688 Length=17951 Score = 125 bits (138), Expect = 7e-24 Identities = 146/192 (76%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 |||| || |||||||||| || || | ||| | ||| |||||||| ||||| || || Sbjct 3734 CCTTCTGGATGTTGTAGTCCGACAGC-GTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 3676 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 |||| ||||||||| || ||||| |||||||| || || || ||||| || ||||| | Sbjct 3675 ATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACGTTG 3616 Query 134643 TCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 | ||||| ||||||||| |||||||| || || ||||| || || || | || || || Sbjct 3615 T-CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 3557 Query 134702 GAAAATTTGCAT 134713 || || ||||| Sbjct 3556 AAAGATCTGCAT 3545 >seq666 Length=16246 Score = 102 bits (112), Expect = 8e-17 Identities = 333/514 (65%), Gaps = 5/514 (1%) Strand=Plus/Minus Query 7470 CCACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTT 7529 ||| || ||||| | ||| ||| || || | | | ||||| ||| | | |||||| | Sbjct 15516 CCATGACCGCGACTTCGAGTACGACTACTTCGGCTTCAAAACATTAGAGAGGGGCTACCT 15457 Query 7530 GTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGT 7589 || | |||||| || | ||| || || || ||| | ||||||||||| | Sbjct 15456 TTTCCGCGTGAACGGCAAAGTGGTGGAGCGGCCGCAGCAGATGATCATGCGCGTGGCGCT 15397 Query 7590 GGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAA 7649 ||||| ||| ||||| | || |||||||| |||||| | | ||||| ||| Sbjct 15396 AGGCATCCACAAGAGCGACATCAAGGCGGCCTTGGAGACGTACGAGCTCATGTCCCAGAA 15337 Query 7650 ACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCG-CCTCAATTGT 7708 || |||||||| ||||||| | || ||| ||||| | || || ||||||| Sbjct 15336 GTTCTTCACGCACGCCACGCCCACGCTCTTCAACGCTGGCACGC-CACGTCCCCAATTGT 15278 Query 7709 CCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGC 7768 ||||||| || ||||| | |||| || ||| || || ||||||||| |||| ||| Sbjct 15277 CCTCGTGCTTCTTGCTGGCTATGCAGGACGACTCGATTGAGGGCATTTACGACACACTGA 15218 Query 7769 GCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGC 7828 | || ||| || ||||| | | || ||||| || | | | || || | | Sbjct 15217 AGCAGTGTGCCTGCATCTCCAAGTGGGCTGGAGGAATTGGCATTAGTATGCACAACATCC 15158 Query 7829 GCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGT 7888 | |||| | ||| |||| ||||||||| ||| || | ||||||| Sbjct 15157 GTGCCACCAACAGCTACATCCGAGGCACCAACGGCTCGTCCAATGGCATCATCCCCATGT 15098 Query 7889 TGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGA---AAGCGCAAAGGCG 7945 |||| ||||| || | | | || | || |||||||| ||| || ||||| || Sbjct 15097 TGCGGGTGTTTAACGATACTGCTCGCTACGTGGACCAGGGCGGAGGTAAACGCAAGGGGT 15038 Query 7946 CCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 | || || || ||||||| |||||||| || Sbjct 15037 CTTTCGCTATTTACCTGGAGCCTTGGCACGCAGA 15004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505375094816280