Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq141 136 5e-27 >seq141 Length=36708 Score = 136 bits (150), Expect = 5e-27 Identities = 373/564 (66%), Gaps = 13/564 (2%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||||||||| || | |||||| || | || || | ||||| || | Sbjct 15206 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATGAGCTCGTTCGAGA 15265 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 | | || |||||||| ||||||||||| |||||||| || |||| |||| || || || Sbjct 15266 AGCTTAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 15324 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA-----ACTTG 39782 || |||||||| || || ||||| ||||| || | || | || ||| || | Sbjct 15325 GAGAAGAAGATACCCTCCACTGCAGCAAAGGCCAGCAGCCGTTCCGGGTAGGACGACACG 15384 Query 39783 TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | | | |||||| | ||||| | |||||||||| ||||| || || || | Sbjct 15385 -CGCGGGTCGCA-CCACTTGAGCGCCCAGTTGGCTTTCTTCTGGACACACGGGATAGTCT 15442 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | || ||| | || | ||| || || | || || | || || || || | || Sbjct 15443 CAATGGCACGCAGCAGGTGGGTTTTCTCGACAATGTCCTTGATGTACGTGTCAATAAGCA 15502 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 | |||| || || |||||||| || || || ||||| || ||||| || || | | Sbjct 15503 GCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGAG 15562 Query 39963 CTTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 | |||| | ||| ||||| || || || | ||||| || || || ||||| || Sbjct 15563 CCTCAGGCACTTGCACCTCGTTGCTGAAGTTCAT--GGCCAAGTTCTCGTTGACTATACC 15620 Query 40021 ATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA 40080 |||||| || ||||| || |||| || || || || || | || | | || | Sbjct 15621 ATCACTGGCAGCAAAGAAGGCCAGCACGTGCTTGATGAAGTGGCGCTCGTTGTCCGTGAG 15680 Query 40081 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGC 40140 || |||||| |||| || | | ||| | || || || ||||| || || || Sbjct 15681 GTTCACCCAGTCCTTGAGGTCGTGCACGAGATCCAGCTCCTCGGCCGTCCAGAAGGAAGC 15740 Query 40141 CTCTGCCTTTTTGTACATGTTCCA 40164 ||| ||||| |||||||| | ||| Sbjct 15741 CTCGGCCTTCTTGTACATCTGCCA 15764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686877124917960