Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20agathidicida_20[genbank_20GCA_5F001314445.1_202015- 10-14] 3,689 sequences; 37,238,500 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq412 114 1e-20 >seq412 Length=22564 Score = 114 bits (126), Expect = 1e-20 Identities = 307/457 (67%), Gaps = 22/457 (5%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC--A 40923 ||||| ||||| || || ||||| || |||| ||| |||||||| || ||||| || | Sbjct 19753 GGTGACCTTGGGCCGGTGTATGGGTTCCAGTGGCGCCATTTTGGTGCCAAATAC-ACGGA 19811 Query 40924 CTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTAT-----AG 40977 | ||| | | ||||| || || |||| | |||||| | | | | || || || Sbjct 19812 C-ATGCATGCGGATTACACTGATCAAGGTGTAGATCAACTGGCTGAG-GTGATTCACAAG 19869 Query 40978 ATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037 | ||| || || | |||| ||| || || || | | || |||||||| | | Sbjct 19870 CTGCGAACGAACCCAA--CCGA---CCGCCGGATCGTACTTTCGGCCTGGAACCCTGCTG 19924 Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATG 41097 | | | |||||| |||| || || || |||| ||||||||||||||| ||| Sbjct 19925 ATCTCAACGAGATGGCGCTGCCGCCCTGCCACATGTTCTGTCAGTTTTACGTTGCTGATG 19984 Query 41098 GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTA 41157 | || || || ||||| |||| || | || | |||||||||||| || || || || | Sbjct 19985 GAGAGCTATCGTGTCAGATGTACCAGCGCTCTGCTGACATGGGACTTGGTGTGCCATTCA 20044 Query 41158 ACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTG 41217 |||| || || || || ||||||||| || | || || || | | ||||||| Sbjct 20045 ACATTGCCAGCTACGCGCTGCTCACGAGATTGGTGGCGCAGGTGGCTGGACTGAAACCTG 20104 Query 41218 GTGAATTTGTTCACACGTTA--GGAGATGGACATATTTACATTAATCACATAGAGCCGTT 41275 | || || || || |||| || || | |||| | || | || ||| | || ||| | Sbjct 20105 GCGAGTTCATT--CATGTTATTGGCGACGCACATGTGTATCTGAACCACGTGGAACCGCT 20162 Query 41276 AACAG-AACAACTGACACGAAAACCTAGACCATTTCC 41311 ||| ||||||| ||||||| || | |||||||| Sbjct 20163 -GCAGAAACAACTTACACGAACGCCACGCCCATTTCC 20198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438130502445